Evidence map›Paper›PMID 35579457›Full record

ArticleMicrobiology spectrum2022

Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium.

Gina Chaput, Jacob Ford, Lani DeDiego, Achala Narayanan, Wing Yin Tam, Meghan Whalen, Marcel Huntemann, Alicia Clum, Alex Spunde, Manoj Pillay and 14 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Lignin Degradation byMolecules (Basel, Switzerland) · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 2 institutions in 1 country.

Gina ChaputDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
Jacob FordDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
Lani DeDiegoDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
Achala NarayananDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
Wing Yin TamDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
Meghan WhalenDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.
Marcel HuntemannUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Alicia ClumUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.ORCID 0000-0002-5004-3362
Alex SpundeUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Manoj PillayUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Krishnaveni PalaniappanUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Neha VargheseUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Natalia MikhailovaUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
I-Min ChenUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Dimitrios StamatisUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
T B K ReddyUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.ORCID 0000-0002-0871-5567
Ronan O'MalleyUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Chris DaumUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Nicole ShapiroUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Natalia IvanovaUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Nikos C KyrpidesUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Tanja WoykeUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.ORCID 0000-0002-9485-5637
Tijana Glavina Del RioUnited States Department of Energy Joint Genome Institute, Berkeley, California, USA.
Kristen M DeAngelisDepartment of Microbiology, University of Massachusetts-Amherst, Amherst, Massachusetts, USA.ORCID 0000-0002-5585-4551
United States Department of Energy · USUniversity of Massachusetts Amherst · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Novel bacterial isolates with the capabilities of lignin depolymerization, catabolism, or both, could be pertinent to lignocellulosic biofuel applications. In this study, we aimed to identify anaerobic bacteria that could address the economic challenges faced with microbial-mediated biotechnologies, such as the need for aeration and mixing. Using a consortium seeded from temperate forest soil and enriched under anoxic conditions with organosolv lignin as the sole carbon source, we successfully isolated a novel bacterium, designated 159R. Based on the 16S rRNA gene, the isolate belongs to the genus

Indexed as

EnterobacteriaceaeLigninAnaerobiosisAnimalsBacterial Typing TechniquesDNA, BacterialPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNASymbiosisDNA, BacterialLigninRNA, Ribosomal, 16Sanaerobic catabolic pathwaysaromatic compoundsaromatic metabolismendosymbiontslignocellulosic biofuel

Identifiers

PMID35579457
PMCPMC9241852
OpenAlexW4280518312

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.