Evidence map›Paper›PMID 35578896›Full record

ReviewJapanese journal of clinical oncology2022

Identification of distinct genomic features reveals frequent somatic AHNAK and PTEN mutations predominantly in primary malignant melanoma presenting in the ureter.

Yan Huang, Lai Wei, Yuanbin Huang, Shuang Wen, Tianqing Liu, Xu Duan, Yutong Wang, Hongshuo Zhang, Bo Fan, Bin Hu

Erratum issuedAbstract readReview
PubMed Publisher
In one paragraph

Review in Japanese journal of clinical oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Yan HuangDepartment of Urology, Cancer Hospital of China Medical University, Liaoning Cancer Hospital and Institute, Shenyang, Liaoning, China.
Lai WeiDepartment of Radiology, Sichuan Province Orthopedic Hospital, Chengdu, Sichuan, China.
Yuanbin HuangDepartment of Urology, Second Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, China.
Shuang WenDepartment of Pathology, Dalian Friendship Hospital, Dalian, Liaoning, China.
Tianqing LiuDepartment of Pathology, Dalian Friendship Hospital, Dalian, Liaoning, China.
Xu DuanFirst Clinical College, Dalian Medical University, Dalian, Liaoning, China.
Yutong WangFirst Clinical College, Dalian Medical University, Dalian, Liaoning, China.
Hongshuo ZhangDepartment of Biochemistry, Institute of Glycobiology, Dalian Medical University, Dalian, Liaoning, China.
Bo FanDepartment of Urology, Second Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, China.ORCID 0000-0001-6598-3237
Bin HuDepartment of Urology, Cancer Hospital of China Medical University, Liaoning Cancer Hospital and Institute, Shenyang, Liaoning, China.
Dalian Medical University · CNYili Friendship Hospital · CNLiaoning Cancer Hospital & Institute · CNSichuan Cancer Hospital · CN

Funding

Cancer Research Special FundChinese Academy of Sciences UF-QN-202004Dalian High-level Talents Innovation Support Program 2019RQ014National Cancer Center NCC2017A13National Natural Science Foundation of China 31800787Natural Science Foundation of Liaoning Province 2019JH8/10300077Second Hospital of Dalian Medical University dy2yhbrc202010
6 · The paper itself

Abstract

backgroundPrimary malignant melanoma of the ureter is extremely rare. Genetic variants to the increased risk of developing the disease have not yet been investigated.

methodsTumour mutation profiling for primary malignant melanoma of the ureter was performed by whole-exome sequencing. Immunohistochemistry was performed to verify histopathological features and the variants of predisposing genes and driver mutation genes. Furthermore, we conducted a literature review and Surveillance, Epidemiology and End Result-based study by searching public databases.

resultsWe identified 38 somatic single nucleotide variants and 9 somatic insertions and deletions (INDELs) in tumour specimens. After filtering with the Cancer Gene Census database, seven predisposing genes and two driver mutation genes were identified. Moreover, the immunohistochemical profile showed that tumour cells were positive for Melan-A, melanoma gp100 human melanoma black 45 (HMB45), S100 beta and P53. The expression levels of two driver mutation genes (phosphatase and tensin homolog (PTEN) and desmoyokin (AHNAK) and five predisposing genes (AT-rich interaction domain 1B (ARID1B), catalase, eukaryotic translation initiation factor 4 gamma 3 (EIF4G3), ANK3 and collagen type I) were significantly downregulated in tumour tissues compared to paracancerous tissues. In the literature review and Surveillance, Epidemiology and End Results-based study, patients with primary malignant melanoma of the urinary tract had worse clinical outcomes than patients with primary urothelial carcinoma after 1:2 propensity score matching (P = 0.010). Additionally, Cox multivariate analysis for patients with primary malignant melanoma of the urinary tract indicated that distant metastasis (hazard ratio = 1.185; P = 0.044) was an independent predictor for overall survival, and tumour focality (hazard ratio = 0.602; P = 0.017) and non-surgery (hazard ratio = 0.434; P = 0.003) were independent factors for tumour progression.

conclusionsOur study is the first to provide evidence that the distinct phenotypes of primary malignant melanoma of the ureter may be due to different genetic variations. The prognosis of primary malignant melanoma of the urinary tract was poorer than that of primary urothelial carcinoma of the urinary tract.

Indexed as

Carcinoma, Transitional CellMelanomaMembrane ProteinsNeoplasm ProteinsPTEN PhosphohydrolaseUrinary Bladder NeoplasmsGenomicsHumansMutationUreterAHNAK protein, humanMembrane ProteinsNeoplasm ProteinsPTEN PhosphohydrolasePTEN protein, humanclinicopathological characteristicmolecular pathogenesisprimary malignant melanoma (PMM) of the ureterprognostic factorSEERwhole-exome sequencing (WES)

Identifiers

PMID35578896
OpenAlexW4225789951

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.