Evidence map›Paper›PMID 35578835›Full record

ArticleeLife2022

Integrative analysis of scRNA-seq and scATAC-seq revealed transit-amplifying thymic epithelial cells expressing autoimmune regulator.

Takahisa Miyao, Maki Miyauchi, S Thomas Kelly, Tommy W Terooatea, Tatsuya Ishikawa, Eugene Oh, Sotaro Hirai, Kenta Horie, Yuki Takakura, Houko Ohki and 13 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Development of αβ and γδ T Cells in the Thymus and Methods of Analysis.International journal of molecular sciences · 2025
    Review
  6. Article
  7. The Ins and Outs of Thymic Epithelial Cell Differentiation and Function.Advances in experimental medicine and biology · 2025
    Review
  8. Review
  9. Article
  10. Article
  11. The single-cell transcriptome of mTECs and CD4Frontiers in immunology · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 3 institutions in 1 country.

Takahisa MiyaoLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Maki MiyauchiLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
S Thomas KellyLaboratory for Cellular Epigenomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.ORCID 0000-0003-3904-6690
Tommy W TerooateaLaboratory for Cellular Epigenomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Tatsuya IshikawaLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Eugene OhLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.ORCID 0000-0001-8534-0183
Sotaro HiraiLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Kenta HorieLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Yuki TakakuraLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Houko OhkiLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Mio HayamaLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Yuya MaruyamaLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Takao SekiLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Hiroto IshiiLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Haruka YabukamiLaboratory for Cellular Epigenomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Masaki YoshidaYCI Laboratory for Immunological Transcriptomics, RIKEN Center for Integrative Medical Sciences, Kanagawa, Japan.
Azusa InoueYCI Laboratory for Metabolic Epigenetics, RIKEN Center for Integrative Medical Sciences, Kanagawa, Japan.
Asako Sakaue-SawanoLaboratory for Cell Function Dynamics, RIKEN Center for Brain Science, Saitama, Japan.
Atsushi MiyawakiLaboratory for Cell Function Dynamics, RIKEN Center for Brain Science, Saitama, Japan.
Masafumi MurataniTransborder Medical Research Center, and Department of Genome Biology, Faculty of Medicine, University of Tsukuba, Ibaraki, Japan.ORCID 0000-0002-0276-8000
Aki MinodaLaboratory for Cellular Epigenomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Nobuko AkiyamaLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.ORCID 0000-0003-1085-5996
Taishin AkiyamaLaboratory for Immune Homeostasis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.ORCID 0000-0002-0341-6154
RIKEN Center for Integrative Medical Sciences · JPRIKEN Center for Brain Science · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Medullary thymic epithelial cells (mTECs) are critical for self-tolerance induction in T cells via promiscuous expression of tissue-specific antigens (TSAs), which are controlled by the transcriptional regulator, AIRE. Whereas AIRE-expressing (Aire

Indexed as

ChromatinSingle-Cell AnalysisAnimalsCell DifferentiationEpithelial CellsMiceMice, Inbred C57BLThymus GlandTransposasesChromatinTransposasesAIREATACdifferentiationimmunologyinflammationmousesingle-cell analysisthymic epithelial cellstransit-amplifying cells

Identifiers

PMID35578835
PMCPMC9113748
OpenAlexW4280532848

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.