Evidence map›Paper›PMID 35577916›Full record

ArticleThe ISME journal2022

Protozoal food vacuoles enhance transformation in Vibrio cholerae through SOS-regulated DNA integration.

Md Hafizur Rahman, Khandaker Rayhan Mahbub, Gustavo Espinoza-Vergara, Angus Ritchie, M Mozammel Hoque, Parisa Noorian, Louise Cole, Diane McDougald, Maurizio Labbate

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. The Implication of Horizontal Gene Transfer BetweenPathogens (Basel, Switzerland) · 2026
    Pooled it
  2. Frontiers in immunology · 2026
    Review
  3. Article
  4. Single-cell RNA-seq reveals a key role forFrontiers in microbiology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Md Hafizur RahmanSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
Khandaker Rayhan MahbubSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.ORCID http://orcid.org/0000-0001-7086-9965
Gustavo Espinoza-VergaraAustralian Institute for Microbiology & Infection, University of Technology Sydney, Sydney, NSW, Australia.
Angus RitchieSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.
M Mozammel HoqueAustralian Institute for Microbiology & Infection, University of Technology Sydney, Sydney, NSW, Australia.ORCID http://orcid.org/0000-0002-6014-6955
Parisa NoorianAustralian Institute for Microbiology & Infection, University of Technology Sydney, Sydney, NSW, Australia.
Louise ColeAustralian Institute for Microbiology & Infection, University of Technology Sydney, Sydney, NSW, Australia.
Diane McDougaldAustralian Institute for Microbiology & Infection, University of Technology Sydney, Sydney, NSW, Australia.ORCID http://orcid.org/0000-0001-5827-8441
Maurizio LabbateSchool of Life Sciences, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia. maurizio.labbate@gmail.com.ORCID http://orcid.org/0000-0003-1428-3382
University of Technology Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vibrio cholerae, the bacterial pathogen responsible for the diarrheal disease cholera, resides in the aquatic environment between outbreaks. For bacteria, genetic variation by lateral gene transfer (LGT) is important for survival and adaptation. In the aquatic environment, V. cholerae is predominantly found in biofilms associated with chitinous organisms or with chitin "rain". Chitin induces competency in V. cholerae, which can lead to LGT. In the environment, V. cholerae is also subjected to predation pressure by protist. Here we investigated whether protozoal predation affected LGT using the integron as a model. Integrons facilitate the integration of mobile DNA (gene cassettes) into the bacterial chromosome. We report that protozoal predation enhances transformation of a gene cassette by as much as 405-fold. We show that oxidative radicals produced in the protozoal phagosome induces the universal SOS response, which in turn upregulates the integron-integrase, the recombinase that facilitates cassette integration. Additionally, we show that during predation, V. cholerae requires the type VI secretion system to acquire the gene cassette from Escherichia coli. These results show that protozoal predation enhances LGT thus producing genetic variants that may have increased capacity to survive grazing. Additionally, the conditions in the food vacuole may make it a "hot spot" for LGT by accumulating diverse bacteria and inducing the SOS response helping drive genetic diversification and evolution.

Indexed as

Vibrio choleraeBacteriaChitinDNAEscherichia coliPhagosomesVacuolesChitinDNA

Identifiers

PMID35577916
PMCPMC9296650
OpenAlexW4280521782

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.