Evidence map›Paper›PMID 35577789›Full record

ArticleNature communications2022

Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.

Kota Ichimaru, Koji Yamaguchi, Kenichi Harada, Yusaku Nishio, Momoka Hori, Kazuya Ishikawa, Haruhiko Inoue, Shusuke Shigeta, Kento Inoue, Keita Shimada and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
  2. Article
  3. Comprehensive Profiling of the RicePlants (Basel, Switzerland) · 2026
    Article
  4. Article
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  6. Article
  7. Molecular Insights into the Role ofPlants (Basel, Switzerland) · 2026
    Article
  8. Review
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  12. Article
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  14. Review
  15. Review
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  17. Article
  18. Proteolysis in plant immunity.The Plant cell · 2024
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Kota Ichimaru *Department of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.
Koji Yamaguchi *Department of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.
Kenichi Harada *Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.
Yusaku NishioDepartment of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.
Momoka HoriDepartment of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.
Kazuya IshikawaDepartment of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.
Haruhiko InouePlant Function Research Unit, Division of Plant and Microbial Sciences, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Kannondai 2-1-2, Ibaraki, Tsukuba, 305-8602, Japan.
Shusuke ShigetaDepartment of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.
Kento InoueDepartment of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.
Keita ShimadaDepartment of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.
Satomi YoshimuraDepartment of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.
Takumi TakedaIwate Biotechnology Research Center, Iwate, 024-0003, Japan.
Eiki YamashitaInstitute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.ORCID 0000-0002-4278-0039
Toshimichi FujiwaraInstitute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.ORCID 0000-0001-7739-3525
Atsushi NakagawaInstitute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.ORCID 0000-0002-1700-7861
Chojiro KojimaInstitute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan. kojima-chojiro-xk@ynu.ac.jp.ORCID 0000-0003-2723-8249
Tsutomu KawasakiDepartment of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan. t-kawasaki@nara.kindai.ac.jp.ORCID 0000-0003-2579-2000
Kindai University · JPThe University of Osaka · JPIwate Biotechnology Research Center · JPNational Agriculture and Food Research Organization · JPYokohama National University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The U-box type ubiquitin ligase PUB44 positively regulates pattern-triggered immunity in rice. Here, we identify PBI1, a protein that interacts with PUB44. Crystal structure analysis indicates that PBI1 forms a four-helix bundle structure. PBI1 also interacts with WRKY45, a master transcriptional activator of rice immunity, and negatively regulates its activity. PBI1 is degraded upon perception of chitin, and this is suppressed by silencing of PUB44 or expression of XopP, indicating that PBI1 degradation depends on PUB44. These data suggest that PBI1 suppresses WRKY45 activity when cells are in an unelicited state, and during chitin signaling, PUB44-mediated degradation of PBI1 leads to activation of WRKY45. In addition, chitin-induced MAP kinase activation is required for WRKY45 activation and PBI1 degradation. These results demonstrate that chitin-induced activation of WRKY45 is regulated by the cooperation between MAP kinase-mediated phosphorylation and PUB44-mediated PBI1 degradation.

Indexed as

OryzaChitinGene Expression Regulation, PlantMitogen-Activated Protein KinasesPlant DiseasesPlant ImmunityPlant ProteinsTranscription FactorsChitinMitogen-Activated Protein KinasesPlant ProteinsTranscription Factors

Identifiers

PMID35577789
PMCPMC9110426
OpenAlexW4280595455

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.