Evidence map›Paper›PMID 35575378›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2022

Chemically Modified Poly(A) Analogs Targeting PABP: Structure Activity Relationship and Translation Inhibitory Properties.

Olga Perzanowska, Miroslaw Smietanski, Jacek Jemielity, Joanna Kowalska

Open access · hybridAbstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Olga PerzanowskaDivision of Biophysics, Faculty of Physics, University of Warsaw, Ludwika Pasteura 5, 02-093, Warsaw, Poland.ORCID http://orcid.org/0000-0003-3687-014X
Miroslaw SmietanskiCentre of New Technologies, University of Warsaw, Stefana Banacha 2c, 02-097, Warsaw, Poland.ORCID http://orcid.org/0000-0002-9482-6588
Jacek JemielityCentre of New Technologies, University of Warsaw, Stefana Banacha 2c, 02-097, Warsaw, Poland.ORCID http://orcid.org/0000-0001-7633-788X
Joanna KowalskaDivision of Biophysics, Faculty of Physics, University of Warsaw, Ludwika Pasteura 5, 02-093, Warsaw, Poland.ORCID http://orcid.org/0000-0002-9174-7999
United Technologies Corporation (Poland) · PLUniversity of Warsaw · PL

Funding

Narodowe Centrum Nauki 2019/33/B/ST4/01843Narodowe Centrum Nauki UMO-2018/31/B/ST5/03821
6 · The paper itself

Abstract

Poly(A)-binding protein (PABP) is an essential element of cellular translational machinery. Recent studies have revealed that poly(A) tail modifications can modulate mRNA stability and translational potential, and that oligoadenylate-derived PABP ligands can act as effective translational inhibitors with potential applications in pain management. Although extensive research has focused on protein-RNA and protein-protein interactions involving PABPs, further studies are required to examine the ligand specificity of PABP. In this study, we developed a microscale thermophoresis-based assay to probe the interactions between PABP and oligoadenylate analogs containing different chemical modifications. Using this method, we evaluated oligoadenylate analogs modified with nucleobase, ribose, and phosphate moieties to identify modification hotspots. In addition, we determined the susceptibility of the modified oligos to CNOT7 to identify those with the potential for increased cellular stability. Consequently, we selected two enzymatically stable oligoadenylate analogs that inhibit translation in rabbit reticulocyte lysates with a higher potency than a previously reported PABP ligand. We believe that the results presented in this study and the implemented methodology can be capitalized upon in the future development of RNA-based biological tools.

Indexed as

Poly AProtein BiosynthesisAnimalsLigandsPoly(A)-Binding ProteinsProtein BindingRabbitsRNARNA, MessengerStructure-Activity RelationshipLigandsPoly APoly(A)-Binding ProteinsRNARNA, Messengerchemical modificationsmicroscale thermophoresismRNAPABPpoly(A)

Identifiers

PMID35575378
PMCPMC9400960
OpenAlexW4280512005

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.