ArticleThe Journal of heredity2022
Reference Genome Assembly of the Big Berry Manzanita (Arctostaphylos glauca).
Article in The Journal of heredity, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
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Who cites it
10 citing papers in PubMed.
- Beyond the Beauty: Meristic and Genomic Signatures of Bangka's Endemic Betta Fishes.F1000Research · 2026Article
- The genome assembly of the duckweed fern, Azolla caroliniana.The Journal of heredity · 2025Article
- A full genome assembly reveals drought stress effects on gene expression and metabolite profiles in blackcurrant (Horticulture research · 2025Article
- Article
- Comprehensive assessment of 11 de novo HiFi assemblers on complex eukaryotic genomes and metagenomes.Genome research · 2024Article
- Plastid Genome Assembly Using Long-read data.Molecular ecology resources · 2023Article
- Reference Genome of the Northwestern Pond Turtle, Actinemys marmorata.The Journal of heredity · 2022Article
- A draft reference genome of the red abalone, Haliotis rufescens, for conservation genomics.The Journal of heredity · 2022Article
- Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern.The Journal of heredity · 2022Article
- Off-target metagenomics: Leveraging whole genome sequencing to study the bacteriome of the liverwortApplications in plant sciencesArticle
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Authors and funding
8 authors.
Funding
Abstract
Arctostaphylos (Ericaceae) species, commonly known as manzanitas, are an invaluable fire-adapted chaparral clade in the California Floristic Province (CFP), a world biodiversity hotspot on the west coast of North America. This diverse woody genus includes many rare and/or endangered taxa, and the genus plays essential ecological roles in native ecosystems. Despite their importance in conservation management, and the many ecological and evolutionary studies that have focused on manzanitas, virtually no research has been conducted on the genomics of any manzanita species. Here, we report the first genome assembly of a manzanita species, the widespread Arctostaphylos glauca. Consistent with the genomics strategy of the California Conservation Genomics project, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises a total of 271 scaffolds spanning 547Mb, close to the genome size estimated by flow cytometry. This assembly, with a scaffold N50 of 31Mb and BUSCO complete score of 98.2%, will be used as a reference genome for understanding the genetic diversity and the basis of adaptations of both common and rare and endangered manzanita species.
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