Evidence map›Paper›PMID 35574576›Full record

ArticleJournal of biomedical science and engineering2018

An Observation Data Driven Simulation and Analysis Framework for Early Stage C. elegans Embryogenesis.

Dali Wang, Zi Wang, Xiaopeng Zhao, Yichi Xu, Zhirong Bao

Open access · diamondAbstract read
In one paragraph

Article in Journal of biomedical science and engineering, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 5 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Dali WangDepartment of Electric Engineering and Computer Science, University of Tennessee, Knoxville, 37996, USA.
Zi WangDepartment of Electric Engineering and Computer Science, University of Tennessee, Knoxville, 37996, USA.
Xiaopeng ZhaoDepartment of Mechanical, Aerospace and Biomedical Engineering, University of Tennessee, Knoxville, 37996, USA.
Yichi XuDevelopmental Biology Program, Memorial Sloan Kettering Cancer Center, NYC, USA.
Zhirong BaoDevelopmental Biology Program, Memorial Sloan Kettering Cancer Center, NYC, USA.
University of Tennessee at Knoxville · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
The Ubiquitin-Proteasome System in Metazoan EmbryogenesisR01GM097576 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI BAO, ZHIRONG · 2011 to 2020
$3.3M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM097576
6 · The paper itself

Abstract

Recent developments in cutting-edge live microscopy and image analysis provide a unique opportunity to systematically investigate individual cell's dynamics as well as simulation-based hypothesis testing. After a summary of data generation and analysis in the observation and modeling efforts related to C. elegans embryogenesis, we develop a systematic approach to model the basic behaviors of individual cells. Next, we present our ideas to model cell fate, division, and movement using 3D time-lapse images within an agent-based modeling framework. Then, we summarize preliminary result and discuss efforts in cell fate, division, and movement modeling. Finally, we discuss the ongoing efforts and future directions for C. elegans embryo modeling, including an inferred developmental landscape for cell fate, a quasi-equilibrium model for cell division, and multi-agent, deep reinforcement learning for cell movement.

Indexed as

3D live imagesAgent-based modelingC. elegans embryogenesisDeep reinforcement learningObservation-driven modeling framework

Identifiers

PMID35574576
PMCPMC9097948
OpenAlexW2888795789

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.