Evidence map›Paper›PMID 35573640›Full record

ArticleJournal of oral microbiology2022

Cross-comparison of microbiota in the oropharynx, hypopharyngeal squamous cell carcinoma and their adjacent tissues through quantitative microbiome profiling.

Hui-Ching Lau, Yujie Shen, Huiying Huang, Xiaohui Yuan, Mengyou Ji, Hongli Gong, Chi-Yao Hsueh, Liang Zhou

Open access · goldAbstract read
In one paragraph

Article in Journal of oral microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Metagenomic shotgun sequencing reveals the enrichment ofComputational and structural biotechnology journal · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hui-Ching LauDepartment of Otorhinolaryngology, Eye & ENT Hospital, Fudan University, Shanghai, PR, China.
Yujie ShenDepartment of Otorhinolaryngology, Eye & ENT Hospital, Fudan University, Shanghai, PR, China.
Huiying HuangDepartment of Otorhinolaryngology, Eye & ENT Hospital, Fudan University, Shanghai, PR, China.
Xiaohui YuanDepartment of Otorhinolaryngology, Eye & ENT Hospital, Fudan University, Shanghai, PR, China.
Mengyou JiDepartment of Otorhinolaryngology, Eye & ENT Hospital, Fudan University, Shanghai, PR, China.
Hongli GongDepartment of Otorhinolaryngology, Eye & ENT Hospital, Fudan University, Shanghai, PR, China.
Chi-Yao HsuehDepartment of Otorhinolaryngology, Eye & ENT Hospital, Fudan University, Shanghai, PR, China.
Liang ZhouDepartment of Otorhinolaryngology, Eye & ENT Hospital, Fudan University, Shanghai, PR, China.
Eye & ENT Hospital of Fudan University · CNShanghai Clinical Research Center · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aims: To clarify the absolute abundance of microbial communities on hypopharyngeal squamous cell carcinoma and their correlation to those in the oropharynx. Methods: Clinical data, swabs, and tissue samples from 27 HPSCC patients were collected in this study and divided into three sampling groups: 19 oropharyngeal mucosa (OPM), 27 hypopharyngeal carcinomas tissues (HC), and 26 corresponding adjacent tissues (AT). Relative microbiome profiling (RMP), and quantitative microbiome profiling (QMP) of 16S rRNA amplicon sequencing were used for analysis. Results: Beta-diversity showed that abundance and phylogenetic tree in OPM group were less when compared to either HC and AT. Although HC and AT were found to have similar microbiota, Bray-Curtis based beta-diversity still highlighted differences. Conclusions: QMP yielded more comprehensive results than RMP. Dysbiosis was found in OPM groups and could be used to narrow down differential microbiome for the HC group. Genera of

Indexed as

ASVcross-sectional studyHPSCCQIIME2Quantitative microbiome profiling

Identifiers

PMID35573640
PMCPMC9103590
OpenAlexW4229439152

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.