Evidence map›Paper›PMID 35572413›Full record

ArticleJournal of advanced research2022

Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus

Jingcheng Zhang, Nan Shen, Chuang Li, Xingjie Xiang, Gaolei Liu, Ying Gui, Sean Patev, David S Hibbett, Kerrie Barry, William Andreopoulos and 9 more

Abstract read
In one paragraph

Article in Journal of advanced research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  5. Genome-wide identification of small GTPase gene family members inApplied and environmental microbiology · 2026
    Article
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  12. Article
  13. Cultivation methods and biology of Lentinula edodes.Applied microbiology and biotechnology · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Advancements in genetic studies of mushrooms: a comprehensive review.World journal of microbiology & biotechnology · 2024
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Jingcheng ZhangInstitute of Applied Mycology, Huazhong Agricultural University, Wuhan, Hubei, China.
Nan ShenInstitute of Applied Mycology, Huazhong Agricultural University, Wuhan, Hubei, China.
Chuang LiInstitute of Applied Mycology, Huazhong Agricultural University, Wuhan, Hubei, China.
Xingjie XiangInstitute of Applied Mycology, Huazhong Agricultural University, Wuhan, Hubei, China.
Gaolei LiuInstitute of Applied Mycology, Huazhong Agricultural University, Wuhan, Hubei, China.
Ying GuiInstitute of Applied Mycology, Huazhong Agricultural University, Wuhan, Hubei, China.
Sean PatevDepartment of Biology, Clark University, Worcester, MA, USA.
David S HibbettDepartment of Biology, Clark University, Worcester, MA, USA.
Kerrie BarryUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
William AndreopoulosUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Anna LipzenUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Robert RileyUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Guifen HeUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Mi YanUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Igor V GrigorievUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Hoi Shan KwanSchool of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region.
Man Kit CheungSchool of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong Special Administrative Region.
Yinbing BianInstitute of Applied Mycology, Huazhong Agricultural University, Wuhan, Hubei, China.
Yang XiaoInstitute of Applied Mycology, Huazhong Agricultural University, Wuhan, Hubei, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Mushroom-forming fungi comprise diverse species that develop complex multicellular structures. In cultivated species, both ecological adaptation and artificial selection have driven genome evolution. However, little is known about the connections among genotype, phenotype and adaptation in mushroom-forming fungi. Objectives: This study aimed to (1) uncover the population structure and demographic history of Methods: We analyzed genomes and fruiting body-related traits (FBRTs) in 133 Results: We detected three distinct subgroups of Conclusion: Adaptation to the local environment, especially temperature, triggered genetic divergence and phenotypic differentiation of

Indexed as

AgaricalesShiitake MushroomsGenomeGenome-Wide Association StudyMetagenomicsAdaptationGenetic divergenceGWASPhenotypic differentiationPopulation genomicsShiitake

Identifiers

PMID35572413
PMCPMC9091725

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.