Evidence map›Paper›PMID 35568729›Full record

ArticleScientific reports2022

TDP-43 regulates cholesterol biosynthesis by inhibiting sterol regulatory element-binding protein 2.

Naohiro Egawa, Yuishin Izumi, Hidefumi Suzuki, Itaru Tsuge, Koji Fujita, Hitoshi Shimano, Keiichi Izumikawa, Nobuhiro Takahashi, Kayoko Tsukita, Takako Enami and 10 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
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  4. Loss of Nuclear TDP-43 Impairs Lipid Metabolism in Microglia-Like Cells.bioRxiv : the preprint server for biology · 2025
    Article
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  13. Implications of TDP-43 in non-neuronal systems.Cell communication and signaling : CCS · 2023
    Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 1 country.

Naohiro EgawaCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Yuishin IzumiDepartment of Clinical Neuroscience, The University of Tokushima Graduate School, Tokushima, Japan.
Hidefumi SuzukiCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Itaru TsugeCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Koji FujitaDepartment of Clinical Neuroscience, The University of Tokushima Graduate School, Tokushima, Japan.
Hitoshi ShimanoDepartment of Endocrinology and Metabolism, Faculty of Medicine, University of Tsukuba, Ibaraki, Japan.
Keiichi IzumikawaDepartment of Applied Biological Science, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Nobuhiro TakahashiDepartment of Applied Biological Science, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Kayoko TsukitaCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Takako EnamiCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Masahiro NakamuraCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Akira WatanabeCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan.
Motoko NaitohDepartment of Plastic and Reconstructive Surgery, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Shigehiko SuzukiDepartment of Plastic and Reconstructive Surgery, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Tsuneyoshi SekiDivision of Neurology/Molecular Brain Science, Kobe University Graduate School of Medicine, Kobe, Japan.
Kazuhiro KobayashiDivision of Neurology/Molecular Brain Science, Kobe University Graduate School of Medicine, Kobe, Japan.
Tatsushi TodaDivision of Neurology/Molecular Brain Science, Kobe University Graduate School of Medicine, Kobe, Japan.
Ryuji KajiDepartment of Clinical Neuroscience, The University of Tokushima Graduate School, Tokushima, Japan.
Ryosuke TakahashiDepartment of Neurology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Haruhisa InoueCenter for iPS Cell Research and Application (CiRA), Kyoto University, Kyoto, Japan. haruhisa@cira.kyoto-u.ac.jp.
Kyoto University · JPTokushima University · JPKobe University · JPRIKEN Center for Advanced Intelligence Project · JPTokyo University of Agriculture and Technology · JPRIKEN BioResource Research Center · JPThe University of Tokyo · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dyslipidemia is considered an essential component of the pathological process of amyotrophic lateral sclerosis (ALS), a fatal motor neuron disease. Although TAR DNA Binding Protein 43 kDa (TDP-43) links both familial and sporadic forms of ALS and cytoplasmic aggregates are a hallmark of most cases of ALS, the molecular mechanism and the in vivo relation of ALS dyslipidemia with TDP-43 have been unclear. To analyze the dyslipidemia-related gene expression by TDP-43, we performed expression microarray and RNA deep sequencing (RNA-Seq) using cell lines expressing high levels of TDP-43 and identified 434 significantly altered genes including sterol regulatory element-binding protein 2 (SREBP2), a master regulator of cholesterol homeostasis and its downstream genes. Elevated TDP-43 impaired SREBP2 transcriptional activity, leading to inhibition of cholesterol biosynthesis. The amount of cholesterol was significantly decreased in the spinal cords of TDP-43-overexpressed ALS model mice and in the cerebrospinal fluids of ALS patients. These results suggested that TDP-43 could play an essential role in cholesterol biosynthesis in relation to ALS dyslipidemia.

Indexed as

Amyotrophic Lateral SclerosisDNA-Binding ProteinsMotor Neuron DiseaseSterol Regulatory Element Binding Protein 2AnimalsHumansMiceSterolsDNA-Binding ProteinsSREBF2 protein, humanSrebf2 protein, mouseSterol Regulatory Element Binding Protein 2SterolsTARDBP protein, humanTardbp protein, mouse

Identifiers

PMID35568729
PMCPMC9107471
OpenAlexW4280492122

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.