Evidence map›Paper›PMID 35566670›Full record

ArticleJournal of clinical medicine2022

Genomic Mutations of BK Polyomavirus in Patients after Kidney Transplantation: A Cross-Sectional Study in Vietnam.

Truong Quy Kien, Pham Quoc Toan, Phan Ba Nghia, Diem Thi Van, Nguyen Van Duc, Do Manh Ha, Nguyen Thi Thuy Dung, Nguyen Thi Thu Ha, Le Thi Bao Quyen, Hoang Trung Vinh and 5 more

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Truong Quy KienDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Pham Quoc ToanDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Phan Ba NghiaDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Diem Thi VanDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Nguyen Van DucDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Do Manh HaDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Nguyen Thi Thuy DungDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Nguyen Thi Thu HaDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Le Thi Bao QuyenDepartment of Microbiology, Faculty of Biology, University of Science, National University of Hanoi, Hanoi 100000, Vietnam.
Hoang Trung VinhDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Bui Van ManhCenter of Emergency, Intensive Care Medicine and Clinical Toxicology, Hanoi 100000, Vietnam.
Hoang Xuan SuInstitute of Biomedicine and Pharmacy, Vietnam Military Medical University, Hanoi 100000, Vietnam.ORCID 0000-0002-5002-0419
Tran Viet TienDepartment of Infectious Disease, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Le Viet ThangDepartment of Nephrology, Military Hospital 103, Vietnam Military Medical University, Hanoi 100000, Vietnam.
Lionel RostaingNephrology, Hemodialysis, Apheresis and Kidney Transplantation Department, Grenoble University Hospital, 38000 Grenoble, France.ORCID 0000-0002-5130-7286
Vietnam Military Medical University · VNCentre Hospitalier Universitaire de Grenoble · FRVietnam National University, Hanoi · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesThe purpose of this study was to identify the SNP sites and determine the BKV genotype circulating in kidney-transplant Vietnamese recipients based on the VP1 gene region.

methods344 samples were collected from post-kidney-transplant recipients at the 103 Vietnam Military Hospital to investigate the number of BKV infections. Positive samples with a sufficient virus concentration were analyzed by nested PCR in the VP1 region, sequencing detected genotyping and single-nucleotide polymorphism.

resultsBKV infection was determined in 214 patients (62.2%), of whom 11 (5.1%) were diagnosed with BKV-associated nephropathy. Among the 90 BKV-I strains sequenced, 89 (98.88%) were strains of I/b-1 and 1 (1.12%) was strain I/b-2. The 60 BKV-IV strains had a greater diversity of subgroups, including 40% IV/a-1, 1.66% IV/a-2, 56.68% IV/c-1, and 1.16% IV/c-2. Additionally, of 11 cases diagnosed with BKVN, seven belonged to subgroup I/b-1 (63.6%) and four to subgroup IV/c-1 (36.4%). Moreover, 22 specific SNPs that were genotype I or IV were determined in this Vietnamese population. Specifically, at position 1745, for the Vietnamese BKV-IV strains, the SNP position (A→G) appeared in 57/60 samples (95%). This causes transformation of the amino acid N→S. This SNP site can enable detection of genotype IV in Vietnam. It represents a unique evolution pattern and mutation that has not been found in other international strains.

conclusionThe BKV-I genotype was more common than BKV-IV; however, mutations that occur on the VP1 typing region of BKV-IV strains were more frequent than in BKV-I strains.

Indexed as

amino acidBK polyomavirusgenotypekidney transplantationsingle nucleotide polymorphismVietnamVP1 region

Identifiers

PMID35566670
PMCPMC9101345
OpenAlexW4225260002

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.