Evidence map›Paper›PMID 35566161›Full record

ArticleMolecules (Basel, Switzerland)2022

Reverse Engineering Analysis of the High-Temperature Reversible Oligomerization and Amyloidogenicity of PSD95-PDZ3.

Sawaros Onchaiya, Tomonori Saotome, Kenji Mizutani, Jose C Martinez, Jeremy R H Tame, Shun-Ichi Kidokoro, Yutaka Kuroda

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Sawaros OnchaiyaDepartment of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 2-24-16, Naka-cho, Koganei-shi 184-8588, Tokyo, Japan.
Tomonori SaotomeInstitute of Global Innovation Research, Tokyo University of Agriculture and Technology, 3-8-1, Harumi-cho, Fuchu-shi 183-8538, Tokyo, Japan.
Kenji MizutaniGraduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro, Yokohama 230-0045, Kanagawa, Japan.ORCID 0000-0002-7337-2134
Jose C MartinezDepartment of Physical Chemistry, Institute of Biotechnology, Faculty of Sciences, University of Granada, 18071 Granada, Spain.ORCID 0000-0003-2657-2456
Jeremy R H TameGraduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro, Yokohama 230-0045, Kanagawa, Japan.
Shun-Ichi KidokoroDepartment of Bioengineering, Nagaoka University of Technology, 1603-1, Kamitomioka-cho, Nagaoka-shi 940-2188, Niigata, Japan.ORCID 0000-0002-3714-867X
Yutaka KurodaDepartment of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 2-24-16, Naka-cho, Koganei-shi 184-8588, Tokyo, Japan.ORCID 0000-0002-3221-4295

Funding

Japan Society for the Promotion of Science KAKENHI-18H02385,21K05288, and 21K15049
6 · The paper itself

Abstract

PSD95-PDZ3, the third PDZ domain of the post-synaptic density-95 protein (MW 11 kDa), undergoes a peculiar three-state thermal denaturation (N ↔ In ↔ D) and is amyloidogenic. PSD95-PDZ3 in the intermediate state (I) is reversibly oligomerized (RO: Reversible oligomerization). We previously reported a point mutation (F340A) that inhibits both ROs and amyloidogenesis and constructed the PDZ3-F340A variant. Here, we “reverse engineered” PDZ3-F340A for inducing high-temperature RO and amyloidogenesis. We produced three variants (R309L, E310L, and N326L), where we individually mutated hydrophilic residues exposed at the surface of the monomeric PDZ3-F340A but buried in the tetrameric crystal structure to a hydrophobic leucine. Differential scanning calorimetry indicated that two of the designed variants (PDZ3-F340A/R309L and E310L) denatured according to the two-state model. On the other hand, PDZ3-F340A/N326L denatured according to a three-state model and produced high-temperature ROs. The secondary structures of PDZ3-F340A/N326L and PDZ3-wt in the RO state were unfolded according to circular dichroism and differential scanning calorimetry. Furthermore, PDZ3-F340A/N326L was amyloidogenic as assessed by Thioflavin T fluorescence. Altogether, these results demonstrate that a single amino acid mutation can trigger the formation of high-temperature RO and concurrent amyloidogenesis.

Indexed as

PDZ DomainsCalorimetry, Differential ScanningCircular DichroismDisks Large Homolog 4 ProteinProtein DenaturationProtein Structure, SecondaryReactive Oxygen SpeciesTemperatureThermodynamicsDisks Large Homolog 4 ProteinReactive Oxygen Speciesamyloidogenicityhigh-temperature reversible oligomerizationmutational analysisoligomeric interface residuesthermal denaturation

Identifiers

PMID35566161
PMCPMC9103278

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.