Evidence map›Paper›PMID 35563297›Full record

ArticleInternational journal of molecular sciences2022

Having a Same Type IIS Enzyme's Restriction Site on Guide RNA Sequence Does Not Affect Golden Gate (GG) Cloning and Subsequent CRISPR/Cas Mutagenesis.

M Moniruzzaman, Yun Zhong, Zhifeng Huang, Guangyan Zhong

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 59% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Seedlessness Trait and Genome Editing-A Review.International journal of molecular sciences · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

M MoniruzzamanInstitute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China.ORCID 0000-0001-6017-0333
Yun ZhongInstitute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China.ORCID 0000-0002-6768-4393
Zhifeng HuangInstitute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China.
Guangyan ZhongInstitute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China.
Guangdong Academy of Agricultural Sciences · CN

Funding

Dean's Foundation of Guangdong Academy of Agricultural Sciences BZ201902Guangdong Provincial Science and Technology Program 2018B020202009Guangdong Provincial Science and Technology Program 2019B030316005Guangdong Provincial Special Fund for Modern Agriculture Industry Technology Innovation Special Teams 2020KJ108National Natural Science Foundation of China 32002016National Natural Science Foundation of China 32072535
6 · The paper itself

Abstract

Golden gate/modular cloning facilitates faster and more efficient cloning by utilizing the unique features of the type IIS restriction enzymes. However, it is known that targeted insertion of DNA fragment(s) must not include internal type IIS restriction recognition sites. In the case of cloning CRISPR constructs by using golden gate (GG) cloning, this narrows down the scope of guide RNA (gRNA) picks because the selection of a good gRNA for successful genome editing requires some obligation of fulfillment, and it is unwanted if a good gRNA candidate cannot be picked only because it has an internal type IIS restriction recognition site. In this article, we have shown that the presence of a type IIS restriction recognition site in a gRNA does not affect cloning and subsequent genome editing. After each step of GG reactions, correct insertions of gRNAs were verified by colony color and restriction digestion and were further confirmed by sequencing. Finally, the final vector containing a

Indexed as

CRISPR-Cas SystemsRNA, Guide, CRISPR-Cas SystemsBase SequenceCloning, MolecularGene EditingMutagenesisRNA, Guide, CRISPR-Cas Systemsbase editinggenome editinggRNA designingmodular cloningplant transformationrestriction digestion

Identifiers

PMID35563297
PMCPMC9101711
OpenAlexW4224984669

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.