Evidence map›Paper›PMID 35562897›Full record

ArticleInternational journal of molecular sciences2022

Placental Transcription Profiling in 6-23 Weeks' Gestation Reveals Differential Transcript Usage in Early Development.

Konstantinos J Bogias, Stephen M Pederson, Shalem Leemaqz, Melanie D Smith, Dale McAninch, Tanja Jankovic-Karasoulos, Dylan McCullough, Qianhui Wan, Tina Bianco-Miotto, James Breen and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Konstantinos J BogiasAdelaide Medical School, University of Adelaide, Adelaide, SA 5005, Australia.ORCID 0000-0002-5776-2052
Stephen M PedersonDame Roma Mitchell Cancer Research Laboratories, Adelaide Medical School, University of Adelaide, Adelaide, SA 5005, Australia.ORCID 0000-0001-8197-3303
Shalem LeemaqzAdelaide Medical School, University of Adelaide, Adelaide, SA 5005, Australia.ORCID 0000-0003-4616-8426
Melanie D SmithFlinders Health and Medical Research Institute, Flinders University, Bedford Park, SA 5042, Australia.ORCID 0000-0001-7016-8245
Dale McAninchAdelaide Medical School, University of Adelaide, Adelaide, SA 5005, Australia.ORCID 0000-0001-9735-6553
Tanja Jankovic-KarasoulosAdelaide Medical School, University of Adelaide, Adelaide, SA 5005, Australia.ORCID 0000-0003-4293-359X
Dylan McCulloughFlinders Health and Medical Research Institute, Flinders University, Bedford Park, SA 5042, Australia.ORCID 0000-0002-4510-3797
Qianhui WanFlinders Health and Medical Research Institute, Flinders University, Bedford Park, SA 5042, Australia.ORCID 0000-0003-4207-4940
Tina Bianco-MiottoRobinson Research Institute, University of Adelaide, Adelaide, SA 5005, Australia.ORCID 0000-0002-8431-5338
James BreenIndigenous Genomics, Telethon Kids Institute (Adelaide Office), Adelaide, SA 5000, Australia.ORCID 0000-0001-6184-0925
Claire T RobertsAdelaide Medical School, University of Adelaide, Adelaide, SA 5005, Australia.ORCID 0000-0002-9250-2192
Flinders University · AUThe University of Adelaide · AUAustralian National University · AU

Funding

Maternal molecular profiles reflect placental function and development across gestationR01HD089685 · NICHD · UNIVERSITY OF ADELAIDE · PI ROBERTS, CLAIRE · 2016 to 2019
$953k
National Health and Medical Research Council GNT1174971NIH HHS 1 R01 HD089685-01
6 · The paper itself

Abstract

The human placenta is a rapidly developing transient organ that is key to pregnancy success. Early development of the conceptus occurs in a low oxygen environment before oxygenated maternal blood begins to flow into the placenta at ~10-12 weeks' gestation. This process is likely to substantially affect overall placental gene expression. Transcript variability underlying gene expression has yet to be profiled. In this study, accurate transcript expression profiles were identified for 84 human placental chorionic villus tissue samples collected across 6-23 weeks' gestation. Differential gene expression (DGE), differential transcript expression (DTE) and differential transcript usage (DTU) between 6-10 weeks' and 11-23 weeks' gestation groups were assessed. In total, 229 genes had significant DTE yet no significant DGE. Integration of DGE and DTE analyses found that differential expression patterns of individual transcripts were commonly masked upon aggregation to the gene-level. Of the 611 genes that exhibited DTU, 534 had no significant DGE or DTE. The four most significant DTU genes

Indexed as

Chorionic VilliPlacentaFemaleGene Expression ProfilingGestational AgeHumansPlacentationPregnancydevelopmenthumanplacentaRNA-seqtranscriptome

Identifiers

PMID35562897
PMCPMC9105363
OpenAlexW4224243387

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.