Evidence map›Paper›PMID 35562392›Full record

ArticleScientific reports2022

Shrimp thrombospondin (TSP): presence of O-β1,4 N-acetylglucosamine polymers and its function in TSP chain association in egg extracellular matrix.

Sirilug Magerd, Thanyaporn Senarai, Orawan Thongsum, Chidchanok Chawiwithaya, Chihiro Sato, Ken Kitajima, Wattana Weerachatyanukul, Somluk Asuvapongpatana, Piyaporn Surinlert

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Sirilug MagerdDepartment of Basic Medical Science, Faculty of Medicine Vajira Hospital, Navamindradhiraj University, Bangkok, Thailand.
Thanyaporn SenaraiDepartment of Anatomy, Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.
Orawan ThongsumDepartment of Anatomy, Faculty of Science, Mahidol University, Bangkok, Thailand.
Chidchanok ChawiwithayaDepartment of Anatomy, Faculty of Science, Mahidol University, Bangkok, Thailand.
Chihiro SatoBioscience and Biotechnology Center and Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.
Ken KitajimaBioscience and Biotechnology Center and Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.
Wattana WeerachatyanukulDepartment of Anatomy, Faculty of Science, Mahidol University, Bangkok, Thailand.
Somluk Asuvapongpatana *Department of Anatomy, Faculty of Science, Mahidol University, Bangkok, Thailand. somluk.asu@mahidol.ac.th.
Piyaporn Surinlert *Chulabhorn International College of Medicine, Thammasat University, Pathum-Thani, Thailand. piyaporn.latte@gmail.com.
Mahidol University · THNagoya University · JPKhon Kaen University · THThammasat University · THVajira Hospital · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We characterized the existence of O-β(1,4)-GlcNAc polymers (β1,4GNP) that were anchored on the O-linked glycosylation sites of shrimp thrombospondin (pmTSP-II). There were five putative β1,4GNP linkages on the epithelial growth factor-like domain of pmTSP-II. Antibody against O-β-GlcNAc (CTD110.6) was used to prove the existence of linear and complex β1,4GNP. The antibody well reacted with linear chito-triose, -tetraose and -pentaose conjugated with phosphatidylethanolamine lipid. The immunoreactivity could also be detected with a complex β1,4GNP within pmTSP-II (at MW > 250 kDa). Upon denaturing the protein with SDS-PAGE buffer, the size of pmTSP-II was shifted to be 250 kDa, approximately 2.5 folds larger than the deduced molecular mass of pmTSP-II (110 kDa), suggesting additional association of pmTSP-II apart from its known disulfide bridging. This was confirmed by chitinase digestion on pmTSP-II protein leading to the subsequent smaller protein bands at 110-170 kDa in time- and concentration-dependent manners. These bands well reacted with CTD110.6 antibody and disappeared after extensive chitinase hydrolysis. Together, we believe that β1,4GNP on pmTSP-II serve the function in an inter-chain association to provide structural architecture of egg extracellular matrix, a novel function of pmTSP-II in reproductive biology.

Indexed as

ChitinasesThrombospondinsAcetylglucosamineAnimalsCrustaceaExtracellular MatrixPolymersProteinsThrombospondin 1AcetylglucosamineChitinasesPolymersProteinsThrombospondin 1Thrombospondins

Identifiers

PMID35562392
PMCPMC9106747
OpenAlexW4280556401

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.