Evidence map›Paper›PMID 35562180›Full record

ArticleScientific reports2022

Rapid, sensitive, and low-cost detection of Escherichia coli bacteria in contaminated water samples using a phage-based assay.

Luis F Alonzo, Paras Jain, Troy Hinkley, Nick Clute-Reinig, Spencer Garing, Ethan Spencer, Van T T Dinh, David Bell, Sam Nugen, Kevin P Nichols and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Luis F AlonzoIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA.
Paras JainIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA.
Troy HinkleyIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA.
Nick Clute-ReinigIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA.
Spencer GaringIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA.
Ethan SpencerIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA.
Van T T DinhIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA.
David BellIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA.
Sam NugenIndependent Consultant, Issaquah, WA, 98027, USA.
Kevin P NicholsIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA.
Anne-Laure M Le NyIntellectual Ventures Laboratory, 14360 SE Eastgate Way, Bellevue, WA, 98007, USA. annelaure.leny@ghlabs.org.
Bellevue Hospital Center · USIntellectual Ventures (United States) · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

Inadequate drinking water quality is among the major causes of preventable mortality, predominantly in young children. Identifying contaminated water sources remains a significant challenge, especially where resources are limited. The current methods for measuring Escherichia coli (E. coli), the WHO preferred indicator for measuring fecal contamination of water, involve overnight incubation and require specialized training. In 2016, UNICEF released a Target Product Profile (TPP) to incentivize product innovations to detect low levels of viable E. coli in water samples in the field in less than 6 h. Driven by this challenge, we developed a phage-based assay to detect and semi-quantify E. coli. We formulated a phage cocktail containing a total of 8 phages selected against an extensive bacterial strain library and recombined with the sensitive NanoLuc luciferase reporter. The assay was optimized to be processed in a microfluidic chip designed in-house and was tested against locally sourced sewage samples and on drinking water sources in Nairobi, Kenya. With this assay, combined with the microfluidic chip platform, we propose a complete automated solution to detect and semi-quantify E. coli at less than 10 MPN/100 mL in 5.5 h by minimally trained personnel.

Indexed as

BacteriophagesDrinking WaterBacteriaEscherichia coliKenyaLuciferasesDrinking WaterLuciferasesnanoluc

Identifiers

PMID35562180
PMCPMC9095594
OpenAlexW4280535206

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.