Evidence map›Paper›PMID 35561127›Full record

ArticleChembiochem : a European journal of chemical biology2022

Connecting Algal Polysaccharide Degradation to Formaldehyde Detoxification.

Stefan Brott, François Thomas, Maike Behrens, Karen Methling, Daniel Bartosik, Theresa Dutschei, Michael Lalk, Gurvan Michel, Thomas Schweder, Uwe T Bornscheuer

Open access · hybridAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Connecting Algal Polysaccharide Degradation to Formaldehyde Detoxification.Chembiochem : a European journal of chemical biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Stefan BrottDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Greifswald, 17487, Germany.ORCID 0000-0003-2346-7706
François ThomasLaboratory of Integrative Biology of Marine Models (LBI2 M), Station Biologique de Roscoff (SBR), Sorbonne Université, CNRS, 29688, Roscoff, Bretagne, France.ORCID 0000-0003-1896-0774
Maike BehrensDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Greifswald, 17487, Germany.ORCID 0000-0003-3757-588X
Karen MethlingDepartment of Cellular Biochemistry & Metabolomics, Institute of Biochemistry, University of Greifswald, Greifswald, 17487, Germany.ORCID 0000-0003-0428-404X
Daniel BartosikDepartment of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Greifswald, 17487, Germany.ORCID 0000-0002-5103-4564
Theresa DutscheiDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Greifswald, 17487, Germany.ORCID 0000-0003-3053-9536
Michael LalkDepartment of Cellular Biochemistry & Metabolomics, Institute of Biochemistry, University of Greifswald, Greifswald, 17487, Germany.ORCID 0000-0002-9230-0267
Gurvan MichelLaboratory of Integrative Biology of Marine Models (LBI2 M), Station Biologique de Roscoff (SBR), Sorbonne Université, CNRS, 29688, Roscoff, Bretagne, France.ORCID 0000-0002-3009-6205
Thomas SchwederDepartment of Pharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Greifswald, 17487, Germany.ORCID 0000-0002-7213-3596
Uwe T BornscheuerDepartment of Biotechnology & Enzyme Catalysis, Institute of Biochemistry, University of Greifswald, Greifswald, 17487, Germany.ORCID 0000-0003-0685-2696
Universität Greifswald · DECentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Formaldehyde is a toxic metabolite that is formed in large quantities during bacterial utilization of the methoxy sugar 6-O-methyl-d-galactose, an abundant monosaccharide in the red algal polysaccharide porphyran. Marine bacteria capable of metabolizing porphyran must therefore possess suitable detoxification systems for formaldehyde. We demonstrate here that detoxification of formaldehyde in the marine Flavobacterium Zobellia galactanivorans proceeds via the ribulose monophosphate pathway. Simultaneously, we show that the genes encoding the key enzymes of this pathway are important for maintaining high formaldehyde resistance. Additionally, these genes are upregulated in the presence of porphyran, allowing us to connect porphyran degradation to the detoxification of formed formaldehyde.

Indexed as

Carbohydrate MetabolismFormaldehydeCarbohydratesPolysaccharidesCarbohydratesFormaldehydePolysaccharidesBacteroidetescarbohydratesCAZymes formaldehyde detoxificationRuMP pathway

Identifiers

PMID35561127
PMCPMC9400963
OpenAlexW4280574785

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.