Evidence map›Paper›PMID 35560188›Full record

ArticleJournal of experimental botany2022

Developing a platform for production of the oxylipin KODA in plants.

Yuta Ihara, Takayuki Wakamatsu, Mineyuki Yokoyama, Daisuke Maezawa, Hiroyuki Ohta, Mie Shimojima

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. High productivity of oxylipin KODA usingPlant biotechnology (Tokyo, Japan) · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yuta IharaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama 226-8501, Japan.
Takayuki WakamatsuSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama 226-8501, Japan.
Mineyuki YokoyamaInternational Environmental and Agricultural Sciences, Tokyo University of Agriculture and Technology, Tokyo 183-8509, Japan.ORCID 0000-0002-8517-1225
Daisuke MaezawaKishi Kasei Co. Ltd., Yokohama 236-0004, Japan.
Hiroyuki OhtaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama 226-8501, Japan.ORCID 0000-0002-1068-3242
Mie ShimojimaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama 226-8501, Japan.ORCID 0000-0003-3172-8638
Tokyo Institute of Technology · JPTokyo University of Agriculture and Technology · JP

Funding

Japan Science and Technology AgencyOPERAProgram of Open Innovation Platform with EnterpriseResearch Institute and Academia
6 · The paper itself

Abstract

KODA (9-hydroxy-10-oxo-12(Z),15(Z)-octadecadienoic acid) is a plant oxylipin involved in recovery from stress. As an agrichemical, KODA helps maintain crop production under various environmental stresses. In plants, KODA is synthesized from α-linolenic acids via 9-lipoxygenase (9-LOX) and allene oxide synthase (AOS), although the amount is usually low, except in the free-floating aquatic plant Lemna paucicostata. To improve KODA biosynthetic yield in other plants such as Nicotiana benthamiana and Arabidopsis thaliana, we developed a system to overproduce KODA in vivo via ectopic expression of L. paucicostata 9-LOX and AOS. The transient expression in N. benthamiana showed that the expression of these two genes is sufficient to produce KODA in leaves. However, stable expression of 9-LOX and AOS (with consequent KODA production) in Arabidopsis plants succeeded only when the two proteins were targeted to plastids or the endoplasmic reticulum/lipid droplets. Although only small amounts of KODA could be detected in crude leaf extracts of transgenic Nicotiana or Arabidopsis plants, subsequent incubation of the extracts increased KODA abundance over time. Therefore, KODA production in transgenic plants stably expressing 9-LOX and AOS requires specific sub-cellular localization of these two enzymes and incubation of crude leaf extracts, which liberates α-linolenic acid via breakdown of endogenous lipids.

Indexed as

ArabidopsisOxylipinsalpha-Linolenic AcidLipoxygenaseNicotianaPlant Extractsalpha-Linolenic AcidLipoxygenaseOxylipinsPlant Extracts9-LOXAllene oxide synthaseArabidopsis thalianaKODANicotiana benthamianaoxylipinα-linolenic acid

Identifiers

PMID35560188
PMCPMC9113317
OpenAlexW4200017917

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.