Evidence map›Paper›PMID 35559393›Full record

ArticleAmerican journal of translational research2022

Integrated analyses of an RNA binding protein-based signature related to tumor immune microenvironment and candidate drugs in osteosarcoma.

Abdulraheem Gul Mohammad, Dapeng Li, Rong He, Xuan Lei, Lianghao Mao, Bing Zhang, Xinyu Zhong, Zhengyu Yin, Wenbing Cao, Wenchao Zhang and 3 more

Open access · greenAbstract read
In one paragraph

Article in American journal of translational research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Strategies to Overcome Resistance to Immune-Based Therapies in Osteosarcoma.International journal of molecular sciences · 2023
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Abdulraheem Gul MohammadDepartment of Orthopedics, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Dapeng LiDepartment of Orthopedics, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Rong HeCancer Institute, The Affiliated People's Hospital of Jiangsu University Zhenjiang 212000, Jiangsu, China.
Xuan LeiDepartment of Burn and Plastic Surgery, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Lianghao MaoDepartment of Orthopedics, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Bing ZhangDepartment of Orthopedics, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Xinyu ZhongDepartment of Orthopedics, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Zhengyu YinDepartment of Orthopedics, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Wenbing CaoDepartment of Orthopedics, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Wenchao ZhangDepartment of Orthopedics, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Ruoxuan HeiDepartment of Hematological Laboratory Science, Jiangsu Key Laboratory of Medical Science and Laboratory Medicine, School of Medicine, Jiangsu University Zhenjiang 212000, Jiangsu, China.
Qiping ZhengDepartment of Hematological Laboratory Science, Jiangsu Key Laboratory of Medical Science and Laboratory Medicine, School of Medicine, Jiangsu University Zhenjiang 212000, Jiangsu, China.
Yiming ZhangDepartment of Orthopedics, Affiliated Hospital of Jiangsu University Zhenjiang 212001, Jiangsu, China.
Jiangsu University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveOsteosarcoma is the most frequent primary bone malignancy, associated with frequent recurrence and lung metastasis. RNA-binding proteins (RBPs) are pivotal in regulating several aspects of cancer biology. Nonetheless, interaction between RBPs and the osteosarcoma immune microenvironment is poorly understood. We investigated whether RBPs can predict prognosis and immunotherapy response in osteosarcoma patients.

methodsWe constructed an RBP-related prognostic signature (RRPS) by univariate coupled with multivariate analyses and verified the independent prognostic efficacy of the signature. Single-sample Gene Set Enrichment Analysis (ssGSEA) along with ESTIMATE analysis were carried out to investigate the variations in immune characteristics between subgroups with various RRPS-scores. Furthermore, we investigatedpossible small molecule drugs using the connectivity map database and validated the expression of hub RBPs by qRT-PCR.

resultsThe RRPS, consisting of seven hub RBPs, was an independent prognostic factor compared to traditional clinical features. The RRPS could distinguish immune functions, immune score, stromal score, tumor purity and tumor infiltration by immune cells in different osteosarcoma subjects. Additionally, patients with high RRPS-scores had lower expression of immune checkpoint genes than patients with low RRPS-scores. We finally identified six small molecule drugs that may improve prognosis in osteosarcoma patients and substantiated notable differences in the contents of these RBPs.

conclusionWe evaluated the prognostic value and clinical application of an RBPs-based prognostic signature and identified promising biomarkers to predict immune cell infiltration and immunotherapy response in osteosarcoma.

Indexed as

immunotherapyOsteosarcomaprognosisRNA-binding proteinsmall molecule drugs

Identifiers

PMID35559393
PMCPMC9091083
OpenAlexW4285743129

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.