Evidence map›Paper›PMID 35552718›Full record

ArticleJournal of cell science2022

ALKBH5 regulates somatic cell reprogramming in a phase-specific manner.

Sherif Khodeer, Arne Klungland, John Arne Dahl

Abstract read
In one paragraph

Article in Journal of cell science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. DNA methylation regulates RNA mCell proliferation · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sherif KhodeerDepartment of Microbiology, Oslo University Hospital, Rikshospitalet, Forskningsveien 1, 0373 Oslo, Norway.ORCID 0000-0001-6851-8568
Arne KlunglandDepartment of Microbiology, Oslo University Hospital, Rikshospitalet, Forskningsveien 1, 0373 Oslo, Norway.
John Arne DahlDepartment of Microbiology, Oslo University Hospital, Rikshospitalet, Forskningsveien 1, 0373 Oslo, Norway.ORCID 0000-0002-4375-2697

Funding

Helse RHF 2018063Helse Sør-Øst RHF 2018063Norges Forskningsråd 289467Oslo University Hospital: Oslo Universitetssykehus
6 · The paper itself

Abstract

Establishment of the pluripotency regulatory network in somatic cells by introducing four transcription factors [octamer binding transcription factor 4 (OCT4; also known as POU5F1), sex determining region Y (SRY)-box 2 (SOX2), Kruppel-like factor 4 (KLF4) and cellular myelocytomatosis (c-MYC)] provides a promising tool for cell-based therapies in regenerative medicine. Nevertheless, the mechanisms at play when generating induced pluripotent stem cells from somatic cells are only partly understood. Here, we show that the RNA-specific N6-methyladenosine (m6A) demethylase ALKBH5 regulates somatic cell reprogramming in a stage-specific manner through its catalytic activity. Knockdown or knockout of Alkbh5 in the early reprogramming phase impairs reprogramming efficiency by reducing the proliferation rate through arresting the cells at G2/M phase and decreasing the upregulation of epithelial markers. On the other hand, ALKBH5 overexpression at the early reprogramming phase has no significant impact on reprogramming efficiency, whereas overexpression at the late phase enhances reprogramming by stabilizing Nanog transcripts, resulting in upregulated Nanog expression. Our study provides mechanistic insight into the crucial dynamic role of ALKBH5, mediated through its catalytic activity, in regulating somatic cell reprogramming at the post-transcriptional level. This article has an associated First Person interview with the first author of the paper.

Indexed as

Cellular ReprogrammingInduced Pluripotent Stem CellsAlkB Homolog 5, RNA DemethylaseCell DifferentiationHumansKruppel-Like Transcription FactorsOctamer Transcription Factor-3SOXB1 Transcription FactorsALKBH5 protein, humanAlkB Homolog 5, RNA DemethylaseKruppel-Like Transcription FactorsOctamer Transcription Factor-3SOXB1 Transcription FactorsAlkbh5Induced pluripotent stem cellsiPSCsNanogReprogrammingSOX2

Identifiers

PMID35552718
PMCPMC9234673

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.