Evidence map›Paper›PMID 35551217›Full record

ArticleScientific reports2022

Lessons from a breast cell annotation competition series for school pupils.

Wenqi Lu, Islam M Miligy, Fayyaz Minhas, Young Saeng Park, David R J Snead, Emad A Rakha, Clare Verrill, Nasir Rajpoot

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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1 citing paper in PubMed.

  1. Article
4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Wenqi LuDepartment of Computer Science, University of Warwick, Coventry, UK.
Islam M MiligyNottingham Breast Cancer Research Centre, Division of Cancer and Stem Cells, School of Medicine, Nottingham City Hospital, University of Nottingham, Nottingham, UK.
Fayyaz MinhasDepartment of Computer Science, University of Warwick, Coventry, UK.
Young Saeng ParkWarwick Manufacturing Group (WMG), University of Warwick, Coventry, UK.
David R J SneadCellular Pathology, University Hospitals Coventry and Warwickshire NHS Trust, Coventry, UK.
Emad A RakhaNottingham Breast Cancer Research Centre, Division of Cancer and Stem Cells, School of Medicine, Nottingham City Hospital, University of Nottingham, Nottingham, UK.
Clare VerrillDepartment of Cellular Pathology, Oxford University Hospitals NHS Foundation Trust, Oxford, Oxfordshire, UK.
Nasir RajpootDepartment of Computer Science, University of Warwick, Coventry, UK. n.m.rajpoot@warwick.ac.uk.

Funding

Department of Health
6 · The paper itself

Abstract

Due to COVID-19 outbreaks, most school pupils have had to be home-schooled for long periods of time. Two editions of a web-based competition "Beat the Pathologists" for school age participants in the UK ran to fill up pupils' spare time after home-schooling and evaluate their ability on contributing to AI annotation. The two editions asked the participants to annotate different types of cells on Ki67 stained breast cancer images. The Main competition was at four levels with different level of complexity. We obtained annotations of four kinds of cells entered by school pupils and ground truth from expert pathologists. In this paper, we analyse school pupils' performance on differentiating different kinds of cells and compare their performance with two neural networks (AlexNet and VGG16). It was observed that children tend to get very good performance in tumour cell annotation with the best F1 measure 0.81 which is a metrics taking both false positives and false negatives into account. Low accuracy was achieved with F1 score 0.75 on positive non-tumour cells and 0.59 on negative non-tumour cells. Superior performance on non-tumour cell detection was achieved by neural networks. VGG16 with training from scratch achieved an F1 score over 0.70 in all cell categories and 0.92 in tumour cell detection. We conclude that non-experts like school pupils have the potential to contribute to large-scale labelling for AI algorithm development if sufficient training activities are organised. We hope that competitions like this can promote public interest in pathology and encourage participation by more non-experts for annotation.

Indexed as

COVID-19NeoplasmsChildData CollectionHumansSchoolsStudents

Identifiers

PMID35551217
PMCPMC9098471

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.