Evidence map›Paper›PMID 35549404›Full record

ArticleScience (New York, N.Y.)2022

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans.

Tabula Sapiens Consortium*, Robert C Jones, Jim Karkanias, Mark A Krasnow, Angela Oliveira Pisco, Stephen R Quake, Julia Salzman, Nir Yosef, Bryan Bulthaup, Phillip Brown and 161 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 783 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
783citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

783 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Energy constraint on human health.Trends in endocrinology and metabolism: TEM · 2026
    Review
  8. Article
  9. Article
  10. Developments in Mast Cell Research.The Journal of allergy and clinical immunology · 2026
    Review
  11. celltypeEnrich: a consensus-based scRNA-seq cluster annotation tool.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

723 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

171 authors.

Tabula Sapiens Consortium*
Robert C Jones
Jim Karkanias
Mark A Krasnow
Angela Oliveira Pisco
Stephen R Quake
Julia Salzman
Nir Yosef
Bryan Bulthaup
Phillip Brown
William Harper
Marisa Hemenez
Ravikumar Ponnusamy
Ahmad Salehi
Bhavani A Sanagavarapu
Eileen Spallino
Ksenia A Aaron
Waldo Concepcion
James M Gardner
Burnett Kelly
Nikole Neidlinger
Zifa Wang
Sheela Crasta
Saroja Kolluru
Maurizio Morri
Serena Y Tan
Kyle J Travaglini
Chenling Xu
Marcela Alcántara-Hernández
Nicole Almanzar
Jane Antony
Benjamin Beyersdorf
Deviana Burhan
Kruti Calcuttawala
Matthew M Carter
Charles K F Chan
Charles A Chang
Stephen Chang
Alex Colville
Rebecca N Culver
Ivana Cvijović
Gaetano D'Amato
Camille Ezran
Francisco X Galdos
Astrid Gillich
William R Goodyer
Yan Hang
Alyssa Hayashi
Sahar Houshdaran
Xianxi Huang
Juan C Irwin
SoRi Jang
Julia Vallve Juanico
Aaron M Kershner
Soochi Kim
Bernhard Kiss
William Kong
Maya E Kumar
Angera H Kuo
Baoxiang Li
Gabriel B Loeb
Wan-Jin Lu
Sruthi Mantri
Maxim Markovic
Patrick L McAlpine
Antoine de Morree
Karim Mrouj
Shravani Mukherjee
Tyler Muser
Patrick Neuhöfer
Thi D Nguyen
Kimberly Perez
Nazan Puluca
Zhen Qi
Poorvi Rao
Hayley Raquer-McKay
Nicholas Schaum
Bronwyn Scott
Bobak Seddighzadeh
Joe Segal
Sushmita Sen
Shaheen Sikandar
Sean P Spencer
Lea C Steffes
Varun R Subramaniam
Aditi Swarup
Michael Swift
Will Van Treuren
Emily Trimm
Stefan Veizades
Sivakamasundari Vijayakumar
Kim Chi Vo
Sevahn K Vorperian
Wanxin Wang
Hannah N W Weinstein
Juliane Winkler
Timothy T H Wu
Jamie Xie
Andrea R Yung
Yue Zhang
Angela M Detweiler
Honey Mekonen
Norma F Neff
Rene V Sit
Michelle Tan
Jia Yan
Gregory R Bean
Vivek Charu
Erna Forgó
Brock A Martin
Michael G Ozawa
Oscar Silva
Angus Toland
Venkata N P Vemuri
Shaked Afik
Kyle Awayan
Olga Borisovna Botvinnik
Ashley Byrne
Michelle Chen
Roozbeh Dehghannasiri
Adam Gayoso
Alejandro A Granados
Qiqing Li
Gita Mahmoudabadi
Aaron McGeever
Julia Eve Olivieri
Madeline Park
Neha Ravikumar
Geoff Stanley
Weilun Tan
Alexander J Tarashansky
Rohan Vanheusden
Peter Wang
Sheng Wang
Galen Xing
Les Dethlefsen
Camille Ezran
Astrid Gillich
Yan Hang
Po-Yi Ho
Juan C Irwin
SoRi Jang
Rebecca Leylek
Shixuan Liu
Jonathan S Maltzman
Ross J Metzger
Ragini Phansalkar
Koki Sasagawa
Rahul Sinha
Hanbing Song
Aditi Swarup
Emily Trimm
Stefan Veizades
Bruce Wang
Philip A Beachy
Michael F Clarke
Linda C Giudice
Franklin W Huang
Kerwyn Casey Huang
Juliana Idoyaga
Seung K Kim
Christin S Kuo
Patricia Nguyen
Thomas A Rando
Kristy Red-Horse
Jeremy Reiter
David A Relman
Justin L Sonnenburg
Albert Wu
Sean M Wu
Tony Wyss-Coray

Funding

UCSF Liver Core CenterP30DK026743 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jennifer Y. Chen · 1986 to 2026
$30.7M
Wnt signaling in muscle stem cell agingP01AG036695 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI THOMAS A. RANDO · 2011 to 2026
$29.3M
Computational- and experimental- driven discovery of splicing regulation and circRNA functionR35GM139517 · NIGMS · STANFORD UNIVERSITY · PI Julia Salzman · 2021 to 2026
$2.9M
Genetic and physiologic regulation of pig islet development and functionR01DK128932 · NIDDK · STANFORD UNIVERSITY · PI BERGER, TRISH, KIM, SEUNG K · 2021 to 2024
$2.6M
Program in Translational and Experimental HematologyT32HL120824 · NHLBI · STANFORD UNIVERSITY · PI MAJETI, RAVINDRA · 2014 to 2023
$2.4M
In vivo systems to discover mechanisms regulating human islet alpha cell functionR01DK126482 · NIDDK · STANFORD UNIVERSITY · PI KIM, SEUNG K, MACDONALD, PATRICK · 2020 to 2023
$2.2M
Hedgehog signaling in taste cell maintenance and regenerationR01DC016892 · NIDCD · STANFORD UNIVERSITY · PI BEACHY, PHILIP A · 2018 to 2022
$1.7M
NHLBI NIH HHS T32 HL120824NIDCD NIH HHS R01 DC016892NIDDK NIH HHS P30 DK026743NIDDK NIH HHS R01 DK126482NIDDK NIH HHS R01 DK128932
6 · The paper itself

Abstract

Molecular characterization of cell types using single-cell transcriptome sequencing is revolutionizing cell biology and enabling new insights into the physiology of human organs. We created a human reference atlas comprising nearly 500,000 cells from 24 different tissues and organs, many from the same donor. This atlas enabled molecular characterization of more than 400 cell types, their distribution across tissues, and tissue-specific variation in gene expression. Using multiple tissues from a single donor enabled identification of the clonal distribution of T cells between tissues, identification of the tissue-specific mutation rate in B cells, and analysis of the cell cycle state and proliferative potential of shared cell types across tissues. Cell type-specific RNA splicing was discovered and analyzed across tissues within an individual.

Indexed as

Atlases as TopicCellsOrgan SpecificityRNA SplicingSingle-Cell AnalysisTranscriptomeB-LymphocytesHumansT-Lymphocytes

Identifiers

PMID35549404
PMCPMC9812260

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.