Evidence map›Paper›PMID 35549289›Full record

ArticleThe journal of physical chemistry letters2022

Ratiometric Sensing of Redox Environments Inside Individual Carboxysomes Trapped in Solution.

William B Carpenter, Abhijit A Lavania, Julia S Borden, Luke M Oltrogge, Davis Perez, Peter D Dahlberg, David F Savage, W E Moerner

Open access · bronzeAbstract read
In one paragraph

Article in The journal of physical chemistry letters, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. [COResearch square · 2026
    Article
  4. Label-Free Anti-Brownian Trapping of Single Nanoparticles in Solution.The journal of physical chemistry. C, Nanomaterials and interfaces · 2024
    Article
  5. Atomic view of photosynthetic metabolite permeability pathways and confinement in synthetic carboxysome shells.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

William B CarpenterDepartment of Chemistry, Stanford University, Stanford, California 94305, United States.ORCID 0000-0002-6174-1035
Abhijit A LavaniaDepartment of Applied Physics, Stanford University, Stanford, California 94305, United States.ORCID 0000-0002-8873-0184
Julia S BordenDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, California 94720, United States.
Luke M OltroggeDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, California 94720, United States.ORCID 0000-0001-5716-9980
Davis PerezDepartment of Chemistry, Stanford University, Stanford, California 94305, United States.
Peter D DahlbergDepartment of Chemistry, Stanford University, Stanford, California 94305, United States.
David F SavageDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, California 94720, United States.ORCID 0000-0003-0042-2257
W E MoernerDepartment of Chemistry, Stanford University, Stanford, California 94305, United States.ORCID 0000-0002-2830-209X
Stanford University · USUniversity of California, Berkeley · USSLAC National Accelerator Laboratory · US

Funding

Self-assembly and function of bacterial microcompartmentsR01GM129241 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI SAVAGE, DAVID FRANK · 2018 to 2021
$1.2M
NIGMS NIH HHS R01 GM129241
6 · The paper itself

Abstract

Diffusion of biological nanoparticles in solution impedes our ability to continuously monitor individual particles and measure their physical and chemical properties. To overcome this, we previously developed the interferometric scattering anti-Brownian electrokinetic (ISABEL) trap, which uses scattering to localize a particle and applies electrokinetic forces that counteract Brownian motion, thus enabling extended observation. Here we present an improved ISABEL trap that incorporates a near-infrared scatter illumination beam and rapidly interleaves 405 and 488 nm fluorescence excitation reporter beams. With the ISABEL trap, we monitored the internal redox environment of individual carboxysomes labeled with the ratiometric redox reporter roGFP2. Carboxysomes widely vary in scattering contrast (reporting on size) and redox-dependent ratiometric fluorescence. Furthermore, we used redox sensing to explore the chemical kinetics within intact carboxysomes, where bulk measurements may contain unwanted contributions from aggregates or interfering fluorescent proteins. Overall, we demonstrate the ISABEL trap's ability to sensitively monitor nanoscale biological objects, enabling new experiments on these systems.

Indexed as

NanoparticlesDiffusionFluorescenceMotionOxidation-Reduction

Identifiers

PMID35549289
PMCPMC9150107
OpenAlexW4280524810

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.