Evidence map›Paper›PMID 35549162›Full record

ArticleAnalytical chemistry2022

A Bayesian Approach to Extracting Kinetic Information from Artificial Enzymatic Networks.

Mathieu G Baltussen, Jeroen van de Wiel, Cristina Lía Fernández Regueiro, Miglė Jakštaitė, Wilhelm T S Huck

Abstract read
In one paragraph

Article in Analytical chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Computing Arithmetic Functions Using Immobilised Enzymatic Reaction Networks.Angewandte Chemie (International ed. in English) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mathieu G BaltussenInstitute for Molecules and Materials, Radboud University Nijmegen, 6525 AJ, Nijmegen, The Netherlands.ORCID 0000-0001-7779-8899
Jeroen van de WielInstitute for Molecules and Materials, Radboud University Nijmegen, 6525 AJ, Nijmegen, The Netherlands.
Cristina Lía Fernández RegueiroInstitute for Molecules and Materials, Radboud University Nijmegen, 6525 AJ, Nijmegen, The Netherlands.
Miglė JakštaitėInstitute for Molecules and Materials, Radboud University Nijmegen, 6525 AJ, Nijmegen, The Netherlands.
Wilhelm T S HuckInstitute for Molecules and Materials, Radboud University Nijmegen, 6525 AJ, Nijmegen, The Netherlands.ORCID 0000-0003-4222-5411

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In order to create artificial enzymatic networks capable of increasingly complex behavior, an improved methodology in understanding and controlling the kinetics of these networks is needed. Here, we introduce a Bayesian analysis method allowing for the accurate inference of enzyme kinetic parameters and determination of most likely reaction mechanisms, by combining data from different experiments and network topologies in a single probabilistic analysis framework. This Bayesian approach explicitly allows us to continuously improve our parameter estimates and behavior predictions by iteratively adding new data to our models, while automatically taking into account uncertainties introduced by the experimental setups or the chemical processes in general. We demonstrate the potential of this approach by characterizing systems of enzymes compartmentalized in beads inside flow reactors. The methods we introduce here provide a new approach to the design of increasingly complex artificial enzymatic networks, making the design of such networks more efficient, and robust against the accumulation of experimental errors.

Indexed as

Bayes TheoremKineticsUncertainty

Identifiers

PMID35549162
PMCPMC9134183

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.