Evidence map›Paper›PMID 35549144›Full record

ArticleACS macro letters2021

DNA Conformation Dictates Strength and Flocculation in DNA-Microtubule Composites.

Karthik R Peddireddy, Davide Michieletto, Gina Aguirre, Jonathan Garamella, Pawan Khanal, Rae M Robertson-Anderson

Open access · greenAbstract read
In one paragraph

Article in ACS macro letters, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Karthik R PeddireddyDepartment of Physics and Biophysics, University of San Diego, 5998 Alcala Park, San Diego, California 92110, United States.ORCID 0000-0003-4282-5484
Davide MichielettoSchool of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh, EH9 3FD, United Kingdom.ORCID 0000-0003-2186-6869
Gina AguirreDepartment of Physics and Biophysics, University of San Diego, 5998 Alcala Park, San Diego, California 92110, United States.
Jonathan GaramellaDepartment of Physics and Biophysics, University of San Diego, 5998 Alcala Park, San Diego, California 92110, United States.
Pawan KhanalDepartment of Physics and Biophysics, University of San Diego, 5998 Alcala Park, San Diego, California 92110, United States.
Rae M Robertson-AndersonDepartment of Physics and Biophysics, University of San Diego, 5998 Alcala Park, San Diego, California 92110, United States.ORCID 0000-0003-4475-4667
University of San Diego · USInstitute of Genetics and Cancer · GB

Funding

Biomimetic cytoskeleton and advanced microscopy to reveal intracellular DNA dynamics and distributionsR15GM123420 · NIGMS · UNIVERSITY OF SAN DIEGO · PI MCGORTY, RYAN, ROBERTSON-ANDERSON, RAE MARIE · 2017 to 2022
$939k
NIGMS NIH HHS R15 GM123420
6 · The paper itself

Abstract

Polymer topology has been shown to play a key role in tuning the dynamics of complex fluids and gels. At the same time, polymer composites, ubiquitous in everyday life, have been shown to exhibit emergent desirable mechanical properties not attainable in single-species systems. Yet, how topology impacts the dynamics and structure of polymer composites remains poorly understood. Here, we create composites of rigid rods (microtubules) polymerized within entangled solutions of flexible linear and ring polymers (DNA) of equal length. We couple optical tweezers microrheology with confocal microscopy and scaled particle theory to show that composites with linear DNA exhibit a strongly nonmonotonic dependence of elasticity and stiffness on microtubule concentration due to depletion-driven polymerization and flocculation of microtubules. In contrast, composites containing ring DNA show a much more modest monotonic increase in elastic strength with microtubule concentration, which we demonstrate arises from the decreased conformational size and increased miscibility of rings.

Indexed as

DNAMicrotubulesFlocculationNucleic Acid ConformationPolymersDNAPolymers

Identifiers

PMID35549144
PMCPMC9239750
OpenAlexW3216036225

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.