Evidence map›Paper›PMID 35546377›Full record

ArticleArchives of virology2022

Recombination drives the emergence of orf virus diversity: evidence from the first complete genome sequence of an Indian orf virus isolate and comparative genomic analysis.

Basanta Pravas Sahu, Prativa Majee, Ravi Raj Singh, Niranjana Sahoo, Debasis Nayak

Abstract read
In one paragraph

Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Recent advances in diagnostic approaches for orf virus.Applied microbiology and biotechnology · 2023
    Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Basanta Pravas SahuDepartment of Biological Sciences and Biomedical Engineering, Indian Institute of Technology Indore, Indore, MP, 453331, India.
Prativa MajeeDepartment of Biological Sciences and Biomedical Engineering, Indian Institute of Technology Indore, Indore, MP, 453331, India.
Ravi Raj SinghDepartment of Biological Sciences and Biomedical Engineering, Indian Institute of Technology Indore, Indore, MP, 453331, India.
Niranjana SahooCentre for Wildlife Health, College of Veterinary Sciences and Animal Husbandry, Bhubaneswar, 751030, India.
Debasis NayakDepartment of Biological Science, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Madhya Pradesh, 462066, India. debasis@iiserb.ac.in.ORCID http://orcid.org/0000-0002-4762-4553

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Contagious pustular dermatitis is a disease that primarily infects small ruminants and possesses zoonotic potential. It is caused by orf virus (ORFV), a member of the genus Parapoxvirus. In this study, we evaluated an ORFV outbreak in goats in Madhya Pradesh, a state in central India, during 2017. The transboundary potential of this virus was evaluated by constructing phylogenetic trees. The complete genome sequence of an ORFV isolate named Ind/MP/17 was found to be 139,807 bp in length with 63.7% GC content and 132 open reading frames (ORFs) flanked by 3,910-bp inverted terminal repeats (ITRs). An investigation into evolutionary parameters such as selection pressure (θ = dN/dS) and nucleotide diversity (π) demonstrated that ORFV has undergone purifying selection. A total of 40 recombination events were identified, 21 of which were evident in the Ind/MP/17 genome, indicating its ability to generate new variants.

Indexed as

Ecthyma, ContagiousOrf virusAnimalsGenomicsGoatsPhylogenyRecombination, GeneticSheep

Identifiers

PMID35546377
PMCPMC9094603

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.