Evidence map›Paper›PMID 35546147›Full record

ArticleNature communications2022

Possible stochastic sex determination in Bursaphelenchus nematodes.

Ryoji Shinya, Simo Sun, Mehmet Dayi, Isheng Jason Tsai, Atsushi Miyama, Anthony Fu Chen, Koichi Hasegawa, Igor Antoshechkin, Taisei Kikuchi, Paul W Sternberg

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Syntenic relationship of chromosomes inPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Article
  6. Review
  7. Environmental (and Random?) Sex Determination in Endangered and Invasive Phelsuma Geckos.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2024
    Article
  8. Article
  9. First Draft Genome Assembly of Root-Lesion NematodeInternational journal of molecular sciences · 2023
    Article
  10. On the evolution of variation in sexual reproduction through the prism of eukaryotic microbes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Review
  11. How didFrontiers in physiology · 2023
    Article
  12. Regulatory roles ofFrontiers in physiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Ryoji ShinyaSchool of Agriculture, Meiji University, Kawasaki, Japan.
Simo SunDivision of Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.
Mehmet DayiDivision of Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.ORCID 0000-0002-5367-918X
Isheng Jason TsaiBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.ORCID 0000-0002-2123-5058
Atsushi MiyamaSchool of Agriculture, Meiji University, Kawasaki, Japan.
Anthony Fu ChenDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA.
Koichi HasegawaDepartment of Environmental Biology, College of Bioscience & Biotechnology, Chubu University, Kasugai, Japan.ORCID 0000-0002-9968-8129
Igor AntoshechkinDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA.ORCID 0000-0002-9934-3040
Taisei KikuchiDivision of Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan. taisei_kikuchi@med.miyazaki-u.ac.jp.ORCID 0000-0003-2759-9167
Paul W SternbergDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, USA. pws@caltech.edu.ORCID 0000-0002-7699-0173
California Institute of Technology · USUniversity of Miyazaki · JPMeiji University · JPBiodiversity Research Center, Academia Sinica · TWChubu University · JP

Funding

Howard Hughes Medical Institute 047-101
6 · The paper itself

Abstract

Sex determination mechanisms evolve surprisingly rapidly, yet little is known in the large nematode phylum other than for Caenorhabditis elegans, which relies on chromosomal XX-XO sex determination and a dosage compensation mechanism. Here we analyze by sex-specific genome sequencing and genetic analysis sex determination in two fungal feeding/plant-parasitic Bursaphelenchus nematodes and find that their sex differentiation is more likely triggered by random, epigenetic regulation than by more well-known mechanisms of chromosomal or environmental sex determination. There is no detectable difference in male and female chromosomes, nor any linkage to sexual phenotype. Moreover, the protein sets of these nematodes lack genes involved in X chromosome dosage counting or compensation. By contrast, our genetic screen for sex differentiation mutants identifies a Bursaphelenchus ortholog of tra-1, the major output of the C. elegans sex determination cascade. Nematode sex determination pathways might have evolved by "bottom-up" accretion from the most downstream regulator, tra-1.

Indexed as

Caenorhabditis elegans ProteinsDisorders of Sex DevelopmentNematodaAnimalsCaenorhabditis elegansDosage Compensation, GeneticEpigenesis, GeneticFemaleHumansMaleX ChromosomeCaenorhabditis elegans Proteins

Identifiers

PMID35546147
PMCPMC9095866
OpenAlexW4280510502

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.