Evidence map›Paper›PMID 35545047›Full record

ArticleCell reports2022

KSHV episome tethering sites on host chromosomes and regulation of latency-lytic switch by CHD4.

Ashish Kumar, Yuanzhi Lyu, Yuichi Yanagihashi, Chanikarn Chantarasrivong, Vladimir Majerciak, Michelle Salemi, Kang-Hsin Wang, Tomoki Inagaki, Frank Chuang, Ryan R Davis and 9 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Molecular Mechanisms of KSHV Latency Establishment and Maintenance.Current clinical microbiology reports · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Viral remodeling of the 4D nucleome.Experimental & molecular medicine · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Ashish KumarDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA.
Yuanzhi LyuDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA.
Yuichi YanagihashiLifescience Division, Lifematics, Osaka, Osaka 541-0046, Japan.
Chanikarn ChantarasrivongLifescience Division, Lifematics, Osaka, Osaka 541-0046, Japan.
Vladimir MajerciakTumor Virus RNA Biology Section, HIV Dynamics and Replication Program, National Cancer Institute, NIH, Frederick, MD 21702, USA.
Michelle SalemiGenome Center, Proteomics Core, Genome and Biomedical Sciences Facility, UC Davis, Davis, CA 95616, USA.
Kang-Hsin WangDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA.
Tomoki InagakiDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA.
Frank ChuangDepartment of Biochemistry and Molecular Medicine, School of Medicine, UC Davis, Sacramento, CA 95817, USA.
Ryan R DavisDepartment of Pathology and Laboratory Medicine, School of Medicine, UC Davis, Sacramento, CA 95817, USA.
Clifford G TepperDepartment of Biochemistry and Molecular Medicine, School of Medicine, UC Davis, Sacramento, CA 95817, USA; Viral Oncology and Pathogen-Associated Malignancies Initiative, UC Davis Comprehensive Cancer Center, Sacramento, CA 95817, USA.
Kazushi NakanoLifescience Division, Lifematics, Osaka, Osaka 541-0046, Japan.
Chie IzumiyaDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA.
Michiko ShimodaDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA; Viral Oncology and Pathogen-Associated Malignancies Initiative, UC Davis Comprehensive Cancer Center, Sacramento, CA 95817, USA.
Ken-Ichi NakajimaDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA.
Alexander MerleevDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA.
Zhi-Ming ZhengTumor Virus RNA Biology Section, HIV Dynamics and Replication Program, National Cancer Institute, NIH, Frederick, MD 21702, USA.
Mel CampbellDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA. Electronic address: mcampbell@ucdavis.edu.
Yoshihiro IzumiyaDepartment of Dermatology School of Medicine, University of California Davis (UC Davis), Sacramento, CA 95817, USA; Department of Biochemistry and Molecular Medicine, School of Medicine, UC Davis, Sacramento, CA 95817, USA; Viral Oncology and Pathogen-Associated Malignancies Initiative, UC Davis Comprehensive Cancer Center, Sacramento, CA 95817, USA. Electronic address: yizumiya@ucdavis.edu.
University of California, Davis · USOASIS Clinic · USNational Cancer Institute · US

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Laura Marcu · 2002 to 2026
$84.9M
Gene Expression and Post-Transcriptional Regulation of DNA Tumor VirusesZIASC010357 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI ZHENG, ZHI-MING · 2009 to 2025
$24.3M
Nano-Therapeutic Approaches for Oncogenic Herpesvirus-Mediated MalignanciesR01CA232845 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI IZUMIYA, YOSHIHIRO, LI, YUANPEI · 2018 to 2022
$3.2M
KSHV Replication in Oral Epithelial CellsR01DE025985 · NIDCR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI IZUMIYA, YOSHIHIRO · 2016 to 2020
$2.0M
Spatiotemporal Gene Regulation and KSHV ReplicationR01CA225266 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI IZUMIYA, YOSHIHIRO · 2018 to 2022
$1.8M
QE-HF-X Mass SpectrometerS10OD026918 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI PHINNEY, BRETT S · 2020 to 2020
$600k
Assembly of Transcriptional Factories by Viral Non-coding RNA ExpressionR21AI147207 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI IZUMIYA, YOSHIHIRO · 2019 to 2020
$432k
Development of Precision Analyses to Reveal "Hit&Run" EffectsR21AI155515 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI IZUMIYA, YOSHIHIRO · 2021 to 2022
$432k
Intramural NIH HHS ZIA SC010357NCI NIH HHS P30 CA093373NCI NIH HHS R01 CA225266NCI NIH HHS R01 CA232845NIAID NIH HHS R21 AI147207NIAID NIH HHS R21 AI155515NIDCR NIH HHS R01 DE025985NIH HHS S10 OD026918
6 · The paper itself

Abstract

Kaposi sarcoma-associated herpesvirus (KSHV) establishes a latent infection in the cell nucleus, but where KSHV episomal genomes are tethered and the mechanisms underlying KSHV lytic reactivation are unclear. Here, we study the nuclear microenvironment of KSHV episomes and show that the KSHV latency-lytic replication switch is regulated via viral long non-coding (lnc)RNA-CHD4 (chromodomain helicase DNA binding protein 4) interaction. KSHV episomes localize with CHD4 and ADNP proteins, components of the cellular ChAHP complex. The CHD4 and ADNP proteins occupy the 5'-region of the highly inducible lncRNAs and terminal repeats of the KSHV genome together with latency-associated nuclear antigen (LANA). Viral lncRNA binding competes with CHD4 DNA binding, and KSHV reactivation sequesters CHD4 from the KSHV genome, which is also accompanied by detachment of KSHV episomes from host chromosome docking sites. We propose a model in which robust KSHV lncRNA expression determines the latency-lytic decision by regulating LANA/CHD4 binding to KSHV episomes.

Indexed as

Herpesvirus 8, HumanRNA, Long NoncodingSarcoma, KaposiAntigens, ViralChromosomesHumansMi-2 Nucleosome Remodeling and Deacetylase ComplexPlasmidsTumor MicroenvironmentVirus LatencyAntigens, ViralCHD4 protein, humanMi-2 Nucleosome Remodeling and Deacetylase ComplexRNA, Long NoncodingADNPChAHP complexCHD4CP: MicrobiologyDNA virusepisome tetheringKSHVLANAlncRNAsmini-TurboIDviral reactivation

Identifiers

PMID35545047
PMCPMC9153692
OpenAlexW4280576475

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.