Evidence map›Paper›PMID 35542615›Full record

ArticleRSC advances2018

Ultrasensitive DNA detection based on target-triggered rolling circle amplification and fluorescent poly(thymine)-templated copper nanoparticles.

Kwan Woo Park, Chang Yeol Lee, Bhagwan S Batule, Ki Soo Park, Hyun Gyu Park

Abstract read
In one paragraph

Article in RSC advances, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kwan Woo ParkDepartment of Chemical and Biomolecular Engineering (BK 21+ Program), KAIST Daehak-ro 291, Yuseong-gu Daejeon 34141 Republic of Korea hgpark@kaist.ac.kr +82-42-350-3910 +82-42-350-3932.
Chang Yeol LeeDepartment of Chemical and Biomolecular Engineering (BK 21+ Program), KAIST Daehak-ro 291, Yuseong-gu Daejeon 34141 Republic of Korea hgpark@kaist.ac.kr +82-42-350-3910 +82-42-350-3932.
Bhagwan S BatuleDepartment of Chemical and Biomolecular Engineering (BK 21+ Program), KAIST Daehak-ro 291, Yuseong-gu Daejeon 34141 Republic of Korea hgpark@kaist.ac.kr +82-42-350-3910 +82-42-350-3932.
Ki Soo ParkDepartment of Biological Engineering, College of Engineering, Konkuk University Seoul 05029 Republic of Korea kskonkuk@gmail.com +82-2-450-3742 +82-2-450-3742.ORCID https://orcid.org/0000-0002-0545-0970
Hyun Gyu ParkDepartment of Chemical and Biomolecular Engineering (BK 21+ Program), KAIST Daehak-ro 291, Yuseong-gu Daejeon 34141 Republic of Korea hgpark@kaist.ac.kr +82-42-350-3910 +82-42-350-3932.ORCID https://orcid.org/0000-0001-9978-3890

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe a novel strategy for the ultrasensitive detection of target DNA based on rolling circle amplification (RCA) coupled with fluorescent poly(thymine)-templated copper nanoparticles (poly T-CuNPs). In the presence of target DNA, a padlock DNA probe that consists of two regions: a target DNA-specific region and a poly(adenine) region, is circularized by the ligation reaction, and the subsequent RCA reaction is promoted to generate long, concatemeric, single-stranded DNA (ssDNA) with a lot of repetitive poly T sequences. As a result, a large number of poly T-CuNPs are formed, exhibiting a highly fluorescent signal. However, in the absence of target DNA or in the presence of non-specific target DNA, the padlock DNA probe is not circularized and the subsequent RCA is not executed, leading to no production of fluorescent poly T-CuNPs. With this simple strategy, we successfully analyzed the target DNA with the ultralow detection limit of 7.79 aM, a value that is 3 or 7 orders of magnitude lower than those of previous RCA-based fluorescent DNA detection strategies. In addition, the developed system was demonstrated to selectively discriminate non-specific target DNAs with one-base mismatch, suggesting potential application in the accurate diagnosis of single nucleotide polymorphisms or mutations.

Identifiers

PMID35542615
PMCPMC9077274

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.