Evidence map›Paper›PMID 35541576›Full record

ArticleRSC advances2019

Proof of concept web application for understanding the energetic basis of oligonucleotide unfolding.

Iztok Prislan, Sara Sajko, Nataša Poklar Ulrih, Luka Fürst

Abstract read
In one paragraph

Article in RSC advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Iztok PrislanBiotechnical Faculty, University of Ljubljana Ljubljana 1000 Slovenia iztok.prislan@bf.uni-lj.si.ORCID https://orcid.org/0000-0003-3740-0561
Sara SajkoMax Perutz Labs Vienna, Medical University of Vienna 1030 Vienna Austria.ORCID https://orcid.org/0000-0002-2563-8786
Nataša Poklar UlrihBiotechnical Faculty, University of Ljubljana Ljubljana 1000 Slovenia iztok.prislan@bf.uni-lj.si.
Luka FürstFaculty of Computer and Information Science, University of Ljubljana Ljubljana 1000 Slovenia luka.fuerst@fri.uni-lj.si.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Measuring and quantifying thermodynamic parameters that determine both the stability of and interactions between biological macromolecules are an essential and necessary complement to structural studies. Although basic thermodynamic parameters for an observed process can be readily obtained, the data interpretation is often slow and analysis quality can be extremely variable. We have started to develop a web application that will help users to perform thermodynamic characterizations of oligonucleotide unfolding. The application can perform global fitting of calorimetric and spectroscopic data, and uses a three-state equilibrium model to obtain thermodynamic parameters for each transition step - namely, the Gibbs energy, the enthalpy, and the heat capacity. In addition, the application can define the number of K

Identifiers

PMID35541576
PMCPMC9076490

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.