Evidence map›Paper›PMID 35539961›Full record

ArticleRSC advances2018

5-Selenocyanato and 5-trifluoromethanesulfonyl derivatives of 2'-deoxyuridine: synthesis, radiation and computational chemistry as well as cytotoxicity.

Samanta Makurat, Magdalena Zdrowowicz, Lidia Chomicz-Mańka, Witold Kozak, Illia E Serdiuk, Paweł Wityk, Alicja Kawecka, Marta Sosnowska, Janusz Rak

Open access · goldAbstract read
In one paragraph

Article in RSC advances, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Low-Energy Electron Damage to Condensed-Phase DNA and Its Constituents.International journal of molecular sciences · 2021
    Review
  9. 5-(International journal of molecular sciences · 2020
    Article
  10. Uracil-5-ylThe journal of physical chemistry. B · 2020
    Article
  11. Reaction of Electrons with DNA: Radiation Damage to Radiosensitization.International journal of molecular sciences · 2019
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Samanta MakuratDepartment of Chemistry, University of Gdańsk Wita Stwosza 63 80-308 Gdańsk Poland janusz.rak@ug.edu.pl.
Magdalena ZdrowowiczDepartment of Chemistry, University of Gdańsk Wita Stwosza 63 80-308 Gdańsk Poland janusz.rak@ug.edu.pl.
Lidia Chomicz-MańkaDepartment of Chemistry, University of Gdańsk Wita Stwosza 63 80-308 Gdańsk Poland janusz.rak@ug.edu.pl.
Witold KozakDepartment of Chemistry, University of Gdańsk Wita Stwosza 63 80-308 Gdańsk Poland janusz.rak@ug.edu.pl.
Illia E SerdiukFaculty of Mathematics, Physics and Informatics, University of Gdańsk Wita Stwosza 57 80-308 Gdańsk Poland.
Paweł WitykDepartment of Chemistry, University of Gdańsk Wita Stwosza 63 80-308 Gdańsk Poland janusz.rak@ug.edu.pl.
Alicja KaweckaDepartment of Chemistry, University of Gdańsk Wita Stwosza 63 80-308 Gdańsk Poland janusz.rak@ug.edu.pl.
Marta SosnowskaDepartment of Chemistry, University of Gdańsk Wita Stwosza 63 80-308 Gdańsk Poland janusz.rak@ug.edu.pl.
Janusz RakDepartment of Chemistry, University of Gdańsk Wita Stwosza 63 80-308 Gdańsk Poland janusz.rak@ug.edu.pl.ORCID https://orcid.org/0000-0003-3036-0536
University of Gdańsk · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

5-Selenocyanato-2'-deoxyuridine (SeCNdU) and 5-trifluoromethanesulfonyl-2'-deoxyuridine (OTfdU) have been synthesized and their structures have been confirmed with NMR and MS methods. Both compounds undergo dissociative electron attachment (DEA) when irradiated with X-rays in an aqueous solution containing a hydroxyl radical scavenger. The DEA yield of SeCNdU significantly exceeds that of 5-bromo-2'-deoxyuridine (BrdU), remaining in good agreement with the computationally revealed profile of electron-induced degradation. The radiolysis products indicate, in line with theoretical predictions, Se-CN bond dissociation as the main reaction channel. On the other hand, the DEA yield for OTfdU is slightly lower than the degradation yield measured for BrdU, despite the fact that the calculated driving force for the electron-induced OTfdU dissociation substantially overpasses the thermodynamic stimulus for BrdU degradation. Moreover, the calculated DEA profile suggests that the electron attachment induced formation of 5-hydroxy-2'-deoxyuridine (OHdU) from OTfdU, while 2'-deoxyuridine (dU) is mainly observed experimentally. We explained this discrepancy in terms of the increased acidity of OTfdU resulting in efficient deprotonation of the N3 atom, which brings about the domination of the OTfdU(N3-H)

Identifiers

PMID35539961
PMCPMC9080949
OpenAlexW2807804154

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.