Evidence map›Paper›PMID 35539058›Full record

ArticleRSC advances2019

Changes in protein hydration dynamics by encapsulation or crowding of ubiquitin: strong correlation between time-dependent Stokes shift and intermolecular nuclear Overhauser effect.

Philipp Honegger, Esther Heid, Stella Schmode, Christian Schröder, Othmar Steinhauser

Open access · goldAbstract read
In one paragraph

Article in RSC advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 5 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 2 countries.

Philipp HoneggerUniversity of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry Währingerstr. 17 A-1090 Vienna Austria os@mdy.univie.ac.at.ORCID https://orcid.org/0000-0001-8225-671X
Esther HeidUniversity of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry Währingerstr. 17 A-1090 Vienna Austria os@mdy.univie.ac.at.ORCID https://orcid.org/0000-0002-8404-6596
Stella SchmodeUniversity of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry Währingerstr. 17 A-1090 Vienna Austria os@mdy.univie.ac.at.ORCID https://orcid.org/0000-0002-1242-1529
Christian SchröderUniversity of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry Währingerstr. 17 A-1090 Vienna Austria os@mdy.univie.ac.at.ORCID https://orcid.org/0000-0002-2167-5096
Othmar SteinhauserUniversity of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry Währingerstr. 17 A-1090 Vienna Austria os@mdy.univie.ac.at.ORCID https://orcid.org/0000-0003-0839-6460
University of Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The local changes in protein hydration dynamics upon encapsulation of the protein or macromolecular crowding are essential to understand protein function in cellular environments. We were able to obtain a spatially-resolved picture of the influence of confinement and crowding on the hydration dynamics of the protein ubiquitin by analyzing the time-dependent Stokes shift (TDSS), as well as the intermolecular Nuclear Overhauser Effect (NOE) at different sites of the protein by large-scale computer simulation of single and multiple proteins in water and confined in reverse micelles. Besides high advanced space resolved information on hydration dynamics we found a strong correlation of the change in NOE upon crowding or encapsulation and the change in the integral TDSS relaxation times in all investigated systems relative to the signals in a diluted protein solution.

Identifiers

PMID35539058
PMCPMC9075347
OpenAlexW2987284854

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.