Evidence map›Paper›PMID 35538497›Full record

ArticleBMC research notes2022

Proximity ligation assay to detect DUX4 protein in FSHD1 muscle: a pilot study.

Mary Lou Beermann, Sachiko Homma, Jeffrey Boone Miller

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mary Lou BeermannDepartment of Neurology, Boston University School of Medicine, 700 Albany Street, Room 408K, Boston, MA, 02118, USA.
Sachiko HommaDepartment of Neurology, Boston University School of Medicine, 700 Albany Street, Room 408K, Boston, MA, 02118, USA.
Jeffrey Boone MillerDepartment of Neurology, Boston University School of Medicine, 700 Albany Street, Room 408K, Boston, MA, 02118, USA. millerjb@bu.edu.ORCID http://orcid.org/0000-0001-5273-2201
Boston University · US

Funding

Mechanisms of DUX4 mediated FSHD pathologyR01AR062587 · NIAMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI JONES, PETER L · 2013 to 2024
$5.3M
FSH Society FSHS-82016Muscular Dystrophy Association 606383NIAMS NIH HHS R01 AR062587NIAMS NIH HHS R01AR062587
6 · The paper itself

Abstract

objectiveAberrant expression in skeletal muscle of DUX4, a double homeobox transcription factor, underlies pathogenesis in facioscapulohumeral muscular dystrophy (FSHD). Although previous studies of FSHD muscle biopsies detected mRNAs encoding DUX4 and its target genes, no studies had reported detection of DUX4 protein. Our objective was to develop a proximity ligation assay (PLA) for DUX4 and to determine if this assay could detect DUX4 protein in FSHD muscle sections.

resultsWe developed a PLA protocol using two DUX4 antibodies previously reported by Stephen Tapscott's group: P2G4, a mouse mAb specific for an epitope in the N-terminal region, and E5-5, a rabbit mAb specific for an epitope in the C-terminal region, in combination with commercial PLA secondary reagents. We validated the DUX4 PLA using cultured human myogenic cells in which DUX4 was ectopically expressed in a small fraction of nuclei. Using this two primary mAb PLA on an FSHD1 biceps biopsy, we observed nuclei with apparent DUX4 PLA signals associated with a small subset of myofibers (~ 0.05-0.1%). Though a limited pilot study, these results suggest that the two primary mAb PLA protocol could be useful for detecting DUX4 protein in FSHD muscle biopsies.

Indexed as

Homeodomain ProteinsMuscular Dystrophy, FacioscapulohumeralAnimalsEpitopesHumansMiceMuscle, SkeletalPilot ProjectsRabbitsDUX4L1 protein, humanEpitopesHomeodomain ProteinsDUX4Facioscapulohumeral muscular dystrophyFSHDProximity ligation assaySkeletal muscle biopsy

Identifiers

PMID35538497
PMCPMC9092897
OpenAlexW4229443339

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.