Evidence map›Paper›PMID 35537551›Full record

ArticleThe Journal of biological chemistry2022

Factor inhibiting HIF can catalyze two asparaginyl hydroxylations in VNVN motifs of ankyrin fold proteins.

Thomas M Leissing, Adam P Hardy, Hokfung Chan, Yihua Wang, Anthony Tumber, Rasheduzzaman Chowdhury, Tianshu Feng, Mathew L Coleman, Matthew E Cockman, Holger B Kramer and 6 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Substrate selectivity and inhibition of the human lysyl hydroxylase JMJD7.Protein science : a publication of the Protein Society · 2024
    Article
  3. Structure-guided optimisation ofChemical science · 2023
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Thomas M LeissingChemistry Research Laboratory, Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, United Kingdom; Ludwig Institute for Cancer Research, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, United Kingdom.
Adam P HardyChemistry Research Laboratory, Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, United Kingdom.
Hokfung ChanLudwig Institute for Cancer Research, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, United Kingdom.
Yihua WangLudwig Institute for Cancer Research, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, United Kingdom.
Anthony TumberChemistry Research Laboratory, Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, United Kingdom.
Rasheduzzaman ChowdhuryChemistry Research Laboratory, Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, United Kingdom.
Tianshu FengLudwig Institute for Cancer Research, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, United Kingdom; NDM Research Building, University of Oxford, Oxford, United Kingdom.
Mathew L ColemanInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, United Kingdom.
Matthew E CockmanThe Francis Crick Institute, Ratcliffe Laboratory, London, United Kingdom.
Holger B KramerMRC London Institute of Medical Sciences, London, United Kingdom; Institute of Clinical Sciences, Imperial College London, Hammersmith Hospital Campus, London, United Kingdom.
Georgina BerridgeNDM Research Building, University of Oxford, Oxford, United Kingdom.
Roman FischerNDM Research Building, University of Oxford, Oxford, United Kingdom.
Benedikt M KesslerNDM Research Building, University of Oxford, Oxford, United Kingdom.
Peter J RatcliffeLudwig Institute for Cancer Research, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, United Kingdom; The Francis Crick Institute, Ratcliffe Laboratory, London, United Kingdom. Electronic address: peter.ratcliffe@ndm.ox.ac.uk.
Xin LuLudwig Institute for Cancer Research, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, United Kingdom. Electronic address: xin.lu@ludwig.ox.ac.uk.
Christopher J SchofieldChemistry Research Laboratory, Department of Chemistry and the Ineos Oxford Institute for Antimicrobial Research, University of Oxford, Oxford, United Kingdom. Electronic address: christopher.schofield@chem.ox.ac.uk.
University of Oxford · GBThe Francis Crick Institute · GBHammersmith Hospital · GBUniversity of Birmingham · GB

Funding

Biotechnology and Biological Sciences Research CouncilCancer Research UK 28285Medical Research Council MR/N021053/1Wellcome TrustWellcome Trust 106244/Z/14/Z
6 · The paper itself

Abstract

The aspariginyl hydroxylase human factor inhibiting hypoxia-inducible factor (FIH) is an important regulator of the transcriptional activity of hypoxia-inducible factor. FIH also catalyzes the hydroxylation of asparaginyl and other residues in ankyrin repeat domain-containing proteins, including apoptosis stimulating of p53 protein (ASPP) family members. ASPP2 is reported to undergo a single FIH-catalyzed hydroxylation at Asn-986. We report biochemical and crystallographic evidence showing that FIH catalyzes the unprecedented post-translational hydroxylation of both asparaginyl residues in "VNVN" and related motifs of ankyrin repeat domains in ASPPs (i.e., ASPP1, ASPP2, and iASPP) and the related ASB11 and p18-INK4C proteins. Our biochemical results extend the substrate scope of FIH catalysis and may have implications for its biological roles, including in the hypoxic response and ASPP family function.

Indexed as

Ankyrin RepeatMixed Function OxygenasesRepressor ProteinsAdaptor Proteins, Signal TransducingAmino Acid SequenceApoptosis Regulatory ProteinsCatalysisHumansHydroxylationHypoxiaAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsHIF1AN protein, humanMixed Function OxygenasesPPP1R13B protein, humanRepressor ProteinsTP53BP2 protein, humanankyrinepigeneticsfactor inhibiting HIFhypoxia-inducible factoriron and 2-oxoglutarate/alpha-ketoglutarate oxygenaseJmjC demethylasepost-translational modification/hydroxylation

Identifiers

PMID35537551
PMCPMC9189129
OpenAlexW4229070627

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.