Evidence map›Paper›PMID 35536318›Full record

ArticleThe Journal of cell biology2022

VMP1 and TMEM41B are essential for DMV formation during β-coronavirus infection.

Mingming Ji, Meng Li, Long Sun, Hongyu Zhao, Ying Li, Lulu Zhou, Zhenni Yang, Xin Zhao, Wenyan Qu, Hanbing Xue and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
6.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 77 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Mingming Ji *National Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0003-0868-1376
Meng Li *Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong, China.ORCID 0000-0002-3728-1817
Long Sun *CAS Key Laboratory of Infection and Immunity, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0003-4889-4624
Hongyu ZhaoNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Ying LiTechnology Center for Protein Sciences, School of Life Science, Tsinghua University, Beijing, China.
Lulu ZhouDepartment of Biomedical Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Zhenni YangDepartment of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Xin ZhaoNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Wenyan QuNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Hanbing XueDepartment of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Ze ZhengDepartment of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong, China.
Yiming LiDepartment of Biomedical Engineering, Southern University of Science and Technology, Shenzhen, Guangdong, China.ORCID 0000-0003-4109-3824
Hongyu DengCAS Key Laboratory of Infection and Immunity, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Yan G ZhaoDepartment of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong, China.ORCID 0000-0002-4588-6752
Southern University of Science and Technology · CNChinese Academy of Sciences · CN

Funding

Chinese Academy of Sciences XDB37030205National Key Research and Development Program of China 2021YFA1300800National Natural Science Foundation of China 32170753Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions 2021SHIBS0002
6 · The paper itself

Abstract

β-coronaviruses reshape host cell endomembranes to form double-membrane vesicles (DMVs) for genome replication and transcription. Ectopically expressed viral nonstructural proteins nsp3 and nsp4 interact to zipper and bend the ER for DMV biogenesis. Genome-wide screens revealed the autophagy proteins VMP1 and TMEM41B as important host factors for SARS-CoV-2 infection. Here, we demonstrated that DMV biogenesis, induced by virus infection or expression of nsp3/4, is impaired in the VMP1 KO or TMEM41B KO cells. In VMP1 KO cells, the nsp3/4 complex forms normally, but the zippered ER fails to close into DMVs. In TMEM41B KO cells, the nsp3-nsp4 interaction is reduced and DMV formation is suppressed. Thus, VMP1 and TMEM41B function at different steps during DMV formation. VMP1 was shown to regulate cross-membrane phosphatidylserine (PS) distribution. Inhibiting PS synthesis partially rescues the DMV defects in VMP1 KO cells, suggesting that PS participates in DMV formation. We provide molecular insights into the collaboration of host factors with viral proteins to remodel host organelles.

Indexed as

COVID-19Membrane ProteinsSARS-CoV-2Viral Replication CompartmentsAutophagyHumansOrganellesPhosphatidylserinesViral Nonstructural ProteinsVirus ReplicationMembrane ProteinsPhosphatidylserinesTMEM41B protein, humanViral Nonstructural ProteinsVMP1 protein, human

Identifiers

PMID35536318
PMCPMC9097365
OpenAlexW4229443847

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.