Evidence map›Paper›PMID 35536217›Full record

ArticleG3 (Bethesda, Md.)2022

Genetic analysis suggests a surface of PAT-4 (ILK) that interacts with UNC-112 (kindlin).

Hiroshi Qadota, Annie McPherson, Rachel Corbitt, Evan Kelton Dackowski, Yohei Matsunaga, Andres F Oberhauser, Guy M Benian

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 92% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Hiroshi QadotaDepartment of Pathology, Emory University, Atlanta, GA 30322, USA.ORCID 0000-0002-6769-9464
Annie McPhersonDepartment of Pathology, Emory University, Atlanta, GA 30322, USA.
Rachel CorbittDepartment of Pathology, Emory University, Atlanta, GA 30322, USA.
Evan Kelton DackowskiDepartment of Pathology, Emory University, Atlanta, GA 30322, USA.
Yohei MatsunagaDepartment of Pathology, Emory University, Atlanta, GA 30322, USA.
Andres F OberhauserDepartment of Neuroscience, Cell Biology and Anatomy, University of Texas Medical Branch, Galveston, TX 77555, USA.ORCID 0000-0001-7375-7109
Guy M BenianDepartment of Pathology, Emory University, Atlanta, GA 30322, USA.ORCID 0000-0002-8236-3176
Emory University · USThe University of Texas Medical Branch at Galveston · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
A Model Multi-systems Approach for Understanding the Role of the PIX Pathway in Cardiac Muscle and CardiomyopathyR01HL160693 · NHLBI · EMORY UNIVERSITY · PI BENIAN, GUY MARTIN · 2022 to 2025
$2.3M
NHLBI NIH HHS R01 HL160693NIH HHS P40 OD010440
6 · The paper itself

Abstract

Integrin plays a crucial role in the attachment of cells to the extracellular matrix. Integrin recruits many proteins intracellularly, including a 4-protein complex (kindlin, ILK, PINCH, and parvin). Caenorhabditis elegans muscle provides an excellent model to study integrin adhesion complexes. In Caenorhabditis elegans, UNC-112 (kindlin) binds to the cytoplasmic tail of PAT-3 (β-integrin) and to PAT-4 (ILK). We previously reported that PAT-4 binding to UNC-112 is essential for the binding of UNC-112 to PAT-3. Although there are crystal structures for ILK and a kindlin, there is no co-crystal structure available. To understand the molecular interaction between PAT-4 and UNC-112, we took a genetic approach. First, using a yeast 2-hybrid method, we isolated mutant PAT-4 proteins that cannot bind to UNC-112 and then isolated suppressor mutant UNC-112 proteins that restore interaction with mutant PAT-4 proteins. Second, we demonstrated that these mutant PAT-4 proteins cannot localize to attachment structures in nematode muscle, but upon co-expression of an UNC-112 suppressor mutant protein, mutant PAT-4 proteins could localize to attachment structures. Third, overexpression of a PAT-4 mutant results in the disorganization of adhesion plaques at muscle cell boundaries and co-expression of the UNC-112 suppressor mutant protein alleviates this defect. Thus, we demonstrate that UNC-112 binding to PAT-4 is required for the localization and function of PAT-4 in integrin adhesion complexes in vivo. The missense mutations were mapped onto homology models of PAT-4 and UNC-112, and taking into account previously isolated mutations, we suggest a surface of PAT-4 that binds to UNC-112.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsBenzeneacetamidesIntegrin beta ChainsIntegrinsMutant ProteinsProtein BindingPyridinesacetyltropic acid 4-pyridylmethylamideBenzeneacetamidesCaenorhabditis elegans ProteinsIntegrin beta ChainsIntegrinsMutant Proteinspat-3 protein, C elegansPyridinesintegrinintegrin adhesion complexKIPP complexmutant screeningsuppressor

Identifiers

PMID35536217
PMCPMC9258589
OpenAlexW4280529607

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.