Evidence map›Paper›PMID 35536004›Full record

ArticlemBio2022

Centromere Interactions Promote the Maintenance of the Multipartite Genome in Agrobacterium tumefaciens.

Zhongqing Ren, Qin Liao, Ian S Barton, Emma E Wiesler, Clay Fuqua, Xindan Wang

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Zhongqing RenDepartment of Biology, Indiana University, Bloomington, Indiana, USA.ORCID 0000-0003-1788-5362
Qin LiaoDepartment of Biology, Indiana University, Bloomington, Indiana, USA.ORCID 0000-0003-1212-4134
Ian S BartonDepartment of Biology, Indiana University, Bloomington, Indiana, USA.ORCID 0000-0002-0461-0522
Emma E WieslerDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Clay FuquaDepartment of Biology, Indiana University, Bloomington, Indiana, USA.ORCID 0000-0001-7051-1760
Xindan WangDepartment of Biology, Indiana University, Bloomington, Indiana, USA.ORCID 0000-0001-6458-180X
Indiana University Bloomington · US

Funding

How bacterial SMC complexes organize chromosomes (Equipment Supplement)R01GM141242 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI WANG, XINDAN · 2021 to 2025
$1.8M
Biosynthesis and regulation of a unipolar polysaccharide in AgrobacteriumR01GM120337 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI FUQUA, WILLIAM C · 2017 to 2020
$1.4M
NIGMS NIH HHS R01 GM120337NIGMS NIH HHS R01 GM141242
6 · The paper itself

Abstract

Many pathogens or symbionts of animals and plants contain multiple replicons, a configuration called a multipartite genome. Multipartite genomes enable those species to replicate their genomes faster and better adapt to new niches. Despite their prevalence, the mechanisms by which multipartite genomes are stably maintained are poorly understood. Agrobacterium tumefaciens is a plant pathogen that contains four replicons: a circular chromosome (Ch1), a linear chromosome (Ch2), and two large plasmids. Recent work indicates that their replication origins are clustered at the cell poles in a manner that depends on their ParB family centromeric proteins: ParB1 for Ch1 and individual RepB paralogs for Ch2 and the plasmids. However, understanding of these interactions and how they contribute to genome maintenance is limited. By combining genome-wide chromosome conformation capture (Hi-C) assays, chromatin-immunoprecipitation sequencing (ChIP-seq), and live cell fluorescence microscopy, we provide evidence here that centromeric clustering is mediated by interactions between these centromeric proteins. We further show that the disruption of centromere clustering results in the loss of replicons. Our data establish the role of centromeric clustering in multipartite genome stability.

Indexed as

Agrobacterium tumefaciensBacterial ProteinsAnimalsCentromerePlasmidsRepliconBacterial ProteinsAgrobacterium tumefaciensChIP-seqGPRHi-CParBPodJPopZRepB

Identifiers

PMID35536004
PMCPMC9239152
OpenAlexW4280577166

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.