Evidence map›Paper›PMID 35534931›Full record

ArticleMolecular microbiology2022

The UvrA-like protein Ecm16 requires ATPase activity to render resistance against echinomycin.

Amanda Erlandson, Priyanka Gade, Inoka P Menikpurage, Chu-Young Kim, Paola E Mera

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Antibiotic adjuvants: synergistic tool to combat multi-drug resistant pathogens.Frontiers in cellular and infection microbiology · 2023
    Review
  7. Proteomic Characterization of Virulence Factors and Related Proteins inInternational journal of molecular sciences · 2022
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Amanda ErlandsonDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Priyanka GadeDepartment of Chemistry and Biochemistry, The University of Texas at El Paso, El Paso, Texas, USA.
Inoka P MenikpurageDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Chu-Young KimDepartment of Chemistry and Biochemistry, The University of Texas at El Paso, El Paso, Texas, USA.
Paola E MeraDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.ORCID 0000-0003-3761-3786
The University of Texas at El Paso · USUniversity of Illinois Urbana-Champaign · USNew Mexico State University · US

Funding

RISE PROGRAM AT NEW MEXICO STATE UNIVERSITYR25GM061222 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI HOUSTON, JESSICA PEREA, REDDI, LAKSHMI · 2000 to 2022
$21.3M
NIGMS NIH HHS R25 GM061222
6 · The paper itself

Abstract

Bacteria use various strategies to become antibiotic resistant. The molecular details of these strategies are not fully understood. We can increase our understanding by investigating the same strategies found in antibiotic-producing bacteria. In this work, we characterize the self-resistance protein Ecm16 encoded by echinomycin-producing bacteria. Ecm16 is a structural homolog of the nucleotide excision repair protein UvrA. Expression of ecm16 in the heterologous system Escherichia coli was sufficient to render resistance against echinomycin. Ecm16 binds DNA (double-stranded and single-stranded) using a nucleotide-independent binding mode. Ecm16's binding affinity for DNA increased by 1.7-fold when the DNA is intercalated with echinomycin. Ecm16 can render resistance against echinomycin toxicity independently of the nucleotide excision repair system. Similar to UvrA, Ecm16 has ATPase activity, and this activity is essential for Ecm16's ability to render echinomycin resistance. Notably, UvrA and Ecm16 were unable to complement each other's function. Together, our findings identify new mechanistic details of how a refurbished DNA repair protein Ecm16 can specifically render resistance to the DNA intercalator echinomycin.

Indexed as

EchinomycinEscherichia coli ProteinsAdenosine TriphosphatasesAdenosine TriphosphateAnti-Bacterial AgentsDNADNA-Binding ProteinsDNA RepairEscherichia coliAdenosine TriphosphatasesAdenosine TriphosphateAnti-Bacterial AgentsDNADNA-Binding ProteinsEchinomycinEscherichia coli ProteinsUvrA protein, E coliantibiotic resistanceDNA intercalatorechinomycinEcm16nucleotide excision repairSOSUvrA

Identifiers

PMID35534931
PMCPMC9328131
OpenAlexW4229444702

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.