Evidence map›Paper›PMID 35534660›Full record

ArticleNeurocritical care2022

Natural Language Processing of Radiology Reports to Detect Complications of Ischemic Stroke.

Matthew I Miller, Agni Orfanoudaki, Michael Cronin, Hanife Saglam, Ivy So Yeon Kim, Oluwafemi Balogun, Maria Tzalidi, Kyriakos Vasilopoulos, Georgia Fanaropoulou, Nina M Fanaropoulou and 10 more

Open access · greenAbstract read
In one paragraph

Article in Neurocritical care, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
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  7. Natural language processing in the intensive care unit: A scoping review.Critical care and resuscitation : journal of the Australasian Academy of Critical Care Medicine · 2024
    Article
  8. Review
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  11. Review
  12. Machine Learning in Clinical Trials: A Primer with Applications to Neurology.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 10 institutions in 3 countries.

Matthew I MillerDepartment of Neurology, Boston University School of Medicine, 85 E. Concord St., Suite 1116, Boston, MA, 02118, USA.
Agni OrfanoudakiSaïd Business School, University of Oxford, Oxford, UK.
Michael CroninDepartment of Neurology, Boston University School of Medicine, 85 E. Concord St., Suite 1116, Boston, MA, 02118, USA.
Hanife SaglamDepartment of Neurology, West Virginia University School of Medicine, Morgantown, WV, USA.
Ivy So Yeon KimBoston Medical Center, Boston, MA, USA.
Oluwafemi BalogunBoston Medical Center, Boston, MA, USA.
Maria TzalidiSchool of Medicine, University of Crete, Heraklion, Greece.
Kyriakos VasilopoulosSchool of Medicine, University of Crete, Heraklion, Greece.
Georgia FanaropoulouSchool of Medicine, University of Crete, Heraklion, Greece.
Nina M FanaropoulouSchool of Medicine, Faculty of Health Sciences, Aristotle University of Thessaloniki, Thessaloniki, Greece.
Jack KalinDepartment of Neurology, Boston University School of Medicine, 85 E. Concord St., Suite 1116, Boston, MA, 02118, USA.
Meghan HutchDepartment of Preventive Medicine, Northwestern University, Chicago, IL, USA.
Brenton R PrescottBoston Medical Center, Boston, MA, USA.
Benjamin BrushDepartment of Neurology, Massachusetts General Hospital, Boston, MA, USA.
Emelia J BenjaminDepartment of Neurology, Boston University School of Medicine, 85 E. Concord St., Suite 1116, Boston, MA, 02118, USA.
Min ShinDepartment of Computer Science, University of North Carolina at Charlotte, Charlotte, NC, USA.
Asim MianDepartment of Radiology, Boston Medical Center, Boston, MA, USA.
David M GreerDepartment of Neurology, Boston University School of Medicine, 85 E. Concord St., Suite 1116, Boston, MA, 02118, USA.
Stelios M SmirnakisDepartment of Neurology, Brigham and Women's Hospital, Boston, MA, USA.
Charlene J OngDepartment of Neurology, Boston University School of Medicine, 85 E. Concord St., Suite 1116, Boston, MA, 02118, USA. cjong@bu.edu.ORCID http://orcid.org/0000-0003-2377-3025
Boston University · USBoston Medical Center · USUniversity of Crete · GRAristotle University of Thessaloniki · GRBrigham and Women's Hospital · USMassachusetts General Hospital · USNorthwestern University · USUniversity of North Carolina at Charlotte · USUniversity of Oxford · GBWest Virginia University · US

Funding

IDENTIFICATION OF COMMON GENETIC VARIANTS FOR ATRIAL FIBRILLATION AND PR INTERVALR01HL092577 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI BENJAMIN, EMELIA J., ELLINOR, PATRICK THOMAS · 2009 to 2025
$20.6M
Multimodal Network Connectivity Architecture (MOCA) of the Brain and its Role in the Recovery of Consciousness in Comatose Cardiac Arrest PatientsR01NS102574 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI GREER, DAVID MATTHEW, WU, ONA · 2018 to 2022
$3.4M
CAPSITE: Community Assessment of Pain and Sensitization in the ElderlyR01AG066010 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI BENJAMIN, EMELIA J., EDWARDS, ROBERT R · 2020 to 2025
$3.3M
Pain in community-based older African American Adults: The Jackson Heart StudyR01AG066914 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI BENJAMIN, EMELIA J., EDWARDS, ROBERT R · 2020 to 2024
$3.2M
FHS-NEXT - Framingham Novel EXam using TechnologyR01HL141434 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI BENJAMIN, EMELIA J., MCMANUS, DAVID D. · 2019 to 2022
$2.5M
Population receptive field analysis in subjects with area V1+ lesions.R01EY024019 · NEI · BRIGHAM AND WOMEN'S HOSPITAL · PI SMIRNAKIS, STELIOS MANOLIS · 2014 to 2017
$1.6M
Dynamic Risk Prediction of Life-Threatening Mass Effect After Ischemic StrokeK23NS116033 · NINDS · BOSTON MEDICAL CENTER · PI ONG, CHARLENE J · 2021 to 2025
$1.0M
Developing a rational strategy for visual rehabilitation after cortical lesionsI01RX002981 · VA · VA BOSTON HEALTH CARE SYSTEM · PI SMIRNAKIS, STELIOS MANOLIS · 2020 to 2024
–
NEI NIH HHS R01 EY024019NHLBI NIH HHS R01 HL092577NHLBI NIH HHS R01 HL141434NIA NIH HHS R01 AG066010NIA NIH HHS R01 AG066914NINDS NIH HHS K23 NS116033NINDS NIH HHS R01 NS102574RRD VA I01 RX002981
6 · The paper itself

Abstract

backgroundAbstraction of critical data from unstructured radiologic reports using natural language processing (NLP) is a powerful tool to automate the detection of important clinical features and enhance research efforts. We present a set of NLP approaches to identify critical findings in patients with acute ischemic stroke from radiology reports of computed tomography (CT) and magnetic resonance imaging (MRI).

methodsWe trained machine learning classifiers to identify categorical outcomes of edema, midline shift (MLS), hemorrhagic transformation, and parenchymal hematoma, as well as rule-based systems (RBS) to identify intraventricular hemorrhage (IVH) and continuous MLS measurements within CT/MRI reports. Using a derivation cohort of 2289 reports from 550 individuals with acute middle cerebral artery territory ischemic strokes, we externally validated our models on reports from a separate institution as well as from patients with ischemic strokes in any vascular territory.

resultsIn all data sets, a deep neural network with pretrained biomedical word embeddings (BioClinicalBERT) achieved the highest discrimination performance for binary prediction of edema (area under precision recall curve [AUPRC] > 0.94), MLS (AUPRC > 0.98), hemorrhagic conversion (AUPRC > 0.89), and parenchymal hematoma (AUPRC > 0.76). BioClinicalBERT outperformed lasso regression (p < 0.001) for all outcomes except parenchymal hematoma (p = 0.755). Tailored RBS for IVH and continuous MLS outperformed BioClinicalBERT (p < 0.001) and linear regression, respectively (p < 0.001).

conclusionsOur study demonstrates robust performance and external validity of a core NLP tool kit for identifying both categorical and continuous outcomes of ischemic stroke from unstructured radiographic text data. Medically tailored NLP methods have multiple important big data applications, including scalable electronic phenotyping, augmentation of clinical risk prediction models, and facilitation of automatic alert systems in the hospital setting.

Indexed as

Ischemic StrokeRadiologyHematomaHumansMachine LearningNatural Language ProcessingCritical careDiagnostic imagingNatural language processingStroke

Identifiers

PMID35534660
PMCPMC9986939
OpenAlexW4229440827

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.