Evidence map›Paper›PMID 35534649›Full record

ArticleJournal of plant research2022

Integrated small RNA profiling and degradome analysis of Anthurium andraeanum cultivars with different-colored spathes.

Fazhuang Lin, Shi-Peng Chen, Kuan-Hung Lin, Changming Chen, Fengqin Yao, Linshan Zhong, Weiting Chen, Yun-Wei Kuo

Abstract read
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In one paragraph

Article in Journal of plant research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Fazhuang Lin *Institute of Flowers, Sanming Academy of Agricultural Sciences, Sanming, 365000, Fujian, China.
Shi-Peng Chen *Institute of Dryland Crops, Sanming Academy of Agricultural Sciences, Sanming, 365000, Fujian, China.
Kuan-Hung LinDepartment of Horticulture and Biotechnology, Chinese Culture University, Taipei, 11114, Taiwan.
Changming ChenInstitute of Flowers, Sanming Academy of Agricultural Sciences, Sanming, 365000, Fujian, China.
Fengqin YaoInstitute of Flowers, Sanming Academy of Agricultural Sciences, Sanming, 365000, Fujian, China.
Linshan ZhongInstitute of Flowers, Sanming Academy of Agricultural Sciences, Sanming, 365000, Fujian, China.
Weiting ChenInstitute of Flowers, Sanming Academy of Agricultural Sciences, Sanming, 365000, Fujian, China.
Yun-Wei KuoInstitute of Flowers, Sanming Academy of Agricultural Sciences, Sanming, 365000, Fujian, China. d00b42012@ntu.edu.tw.ORCID http://orcid.org/0000-0003-3115-9850

Funding

Fujian Provincial Department of Science and Technology 2019N0044
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are known to play vital roles in coloration of leaves, flowers, and fruits in plants. However, their functions in spathe coloration are poorly known. Anthurium andraeanum is a popular ornamental plant with various spathe colors. In this study, small RNA and degradome libraries from three A. andraeanum cultivars with different-colored spathes were constructed and sequenced. Illumina sequencing resulted in 94 conserved miRNAs, and 34 novel miRNAs in total were then identified based on precursor sequences and hairpin structures. Differential expression analysis showed that 52, 51, and 49 miRNAs were differentially expressed in comparisons of orange- versus white-colored spathe, purple- versus white-colored spathe, and purple- versus orange-colored spathe, respectively. The expression patterns of miRNAs and their corresponding targets involved in spathe coloration were further analyzed, and displayed that miR156b and miR529 were highly abundant in the spathes with higher anthocyanin content. These two miRNAs co-targeted a gene encoding SPL17, which may function as a negative regulator in anthocyanin accumulation. In addition, miR408 was also abundantly expressed in purple- and orange-colored spathes, and its typical targets were also identified. This comprehensive integrated analysis provides insight into the miRNA-mediated genetic regulation in spathe coloration of A. andraeanum.

Indexed as

AraceaeMicroRNAsAnthocyaninsGene Expression ProfilingGene Expression Regulation, PlantHigh-Throughput Nucleotide SequencingRNA, PlantSequence Analysis, RNAAnthocyaninsMicroRNAsRNA, PlantAnthurium andraeanumDegradomemiRNASpathe colorsRNA-sequencing

Identifiers

PMID35534649

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.