Evidence map›Paper›PMID 35534561›Full record

ArticleNature genetics2022

The disordered N-terminal domain of DNMT3A recognizes H2AK119ub and is required for postnatal development.

Tianpeng Gu, Dapeng Hao, Junsung Woo, Teng-Wei Huang, Lei Guo, Xueqiu Lin, Anna G Guzman, Ayala Tovy, Carina Rosas, Mira Jeong and 5 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
  2. Multidomain interaction governs the filamentous assembly of the dominant-negative DNMT3A R882H mutant.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  14. Polycomb Repressive Complex 1 and USP16 localize to the mitochondrion and influence its function.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Article
  16. Article
  17. DNA Methylation in Long-Term Memory.Physiology (Bethesda, Md.) · 2025
    Review
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  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Tianpeng Gu *Molecular and Cellular Biology Department, Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.
Dapeng Hao *Division of Biostatistics, Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-9043-371X
Junsung WooCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.
Teng-Wei HuangCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-8604-1262
Lei GuoDepartment of Translational Medical Science, Institute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.
Xueqiu LinDivision of Biostatistics, Dan L Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.
Anna G GuzmanMolecular and Cellular Biology Department, Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.
Ayala TovyMolecular and Cellular Biology Department, Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.
Carina RosasMolecular and Cellular Biology Department, Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.
Mira JeongMolecular and Cellular Biology Department, Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.
Yubin ZhouDepartment of Translational Medical Science, Institute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.ORCID http://orcid.org/0000-0001-7962-0517
Benjamin DeneenCenter for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.ORCID http://orcid.org/0000-0002-6335-1081
Yun HuangDepartment of Translational Medical Science, Institute of Biosciences and Technology, Texas A&M University, Houston, TX, USA.ORCID http://orcid.org/0000-0001-5950-9168
Wei LiDivision of Computational Biomedicine, Department of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, CA, USA.ORCID http://orcid.org/0000-0001-9931-5990
Margaret A GoodellMolecular and Cellular Biology Department, Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA. goodell@bcm.edu.ORCID http://orcid.org/0000-0003-1111-2932
Baylor College of Medicine · USTexas A&M University · USHarbin Medical University · CNUniversity of California, Irvine · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
Wnt signaling in muscle stem cell agingP01AG036695 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MARGARET A. GOODELL · 2011 to 2026
$29.3M
REGULATION OF HEMATOPOIETIC PROGENITORS BY DE NOVO DNA METHYLATIONR01DK092883 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI GOODELL, MARGARET A. · 2012 to 2024
$7.4M
DNMT3A in Development of Hematologic MalignanciesR01CA183252 · NCI · BAYLOR COLLEGE OF MEDICINE · PI MARGARET A. GOODELL · 2014 to 2026
$7.1M
Transcriptional regulation of gliogenesis in the CNSR01NS071153 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI DENEEN, BENJAMIN · 2010 to 2022
$5.0M
Transfer: DNA Methylation Canyons in Human Cancers: Methods, Target Genes and Functional ConsequencesR01CA228140 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI LI, WEI · 2019 to 2023
$2.8M
MOLECULAR CONTROL OF CALCIUM INFLUX AT THE ER-PLASMA MEMBRANE JUNCTIONSR01GM112003 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ZHOU, YUBIN · 2014 to 2022
$2.7M
Computational and Experimental Modeling of Epigenetic DNA MethylationR01HG007538 · NHGRI · UNIVERSITY OF CALIFORNIA-IRVINE · PI LI, WEI · 2014 to 2018
$1.9M
TET-mediated epigenetic regulation in cardiac development.R01HL134780 · NHLBI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI HUANG, YUN · 2018 to 2022
$1.9M
Role of TET dioxygenase associated immune mechanisms in cardiac injury and repairR01HL146852 · NHLBI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI HUANG, YUN · 2019 to 2022
$1.7M
NCI NIH HHS P30 CA125123NCI NIH HHS R01 CA183252NCI NIH HHS R01 CA228140NHGRI NIH HHS R01 HG007538NHLBI NIH HHS R01 HL134780NHLBI NIH HHS R01 HL146852NIDDK NIH HHS R01 DK092883NIGMS NIH HHS R01 GM112003NINDS NIH HHS R01 NS071153
6 · The paper itself

Abstract

DNA methyltransferase 3a (DNMT3A) plays a crucial role during mammalian development. Two isoforms of DNMT3A are differentially expressed from stem cells to somatic tissues, but their individual functions remain largely uncharacterized. Here we report that the long isoform DNMT3A1, but not the short DNMT3A2, is essential for mouse postnatal development. DNMT3A1 binds to and regulates bivalent neurodevelopmental genes in the brain. Strikingly, Dnmt3a1 knockout perinatal lethality could be partially rescued by DNMT3A1 restoration in the nervous system. We further show that the intrinsically disordered N terminus of DNMT3A1 is required for normal development and DNA methylation at DNMT3A1-enriched regions. Mechanistically, a ubiquitin-interacting motif embedded in a putative α-helix within the N terminus binds to mono-ubiquitinated histone H2AK119, probably mediating recruitment of DNMT3A1 to Polycomb-regulated regions. These data demonstrate an isoform-specific role for DNMT3A1 in mouse postnatal development and reveal the N terminus as a necessary regulatory domain for DNMT3A1 chromatin occupancy and functions in the nervous system.

Indexed as

DNA Modification MethylasesHistonesAnimalsDNA MethylationMiceProtein IsoformsDNA Modification MethylasesDnmt3a1 protein, mouseHistonesProtein Isoforms

Identifiers

PMID35534561
PMCPMC9295050
OpenAlexW4229457798

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.