Evidence map›Paper›PMID 35534535›Full record

ArticleCommunications biology2022

Functional and structural characterization of interactions between opposite subunits in HCN pacemaker channels.

Mahesh Kondapuram, Benedikt Frieg, Sezin Yüksel, Tina Schwabe, Christian Sattler, Marco Lelle, Andrea Schweinitz, Ralf Schmauder, Klaus Benndorf, Holger Gohlke and 1 more

Abstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Mahesh Kondapuram *Universitätsklinikum Jena, Institut für Physiologie II, Jena, Germany.ORCID 0000-0002-9287-7189
Benedikt Frieg *John von Neumann-Institut für Computing (NIC), Jülich Supercomputing Centre (JSC), and Institut für Biologische Informationsprozesse (IBI-7: Strukturbiochemie), Forschungszentrum Jülich GmbH, Jülich, Germany.
Sezin YükselUniversitätsklinikum Jena, Institut für Physiologie II, Jena, Germany.
Tina SchwabeUniversitätsklinikum Jena, Institut für Physiologie II, Jena, Germany.
Christian SattlerUniversitätsklinikum Jena, Institut für Physiologie II, Jena, Germany.ORCID 0000-0003-0731-0469
Marco LelleUniversitätsklinikum Jena, Institut für Physiologie II, Jena, Germany.
Andrea SchweinitzUniversitätsklinikum Jena, Institut für Physiologie II, Jena, Germany.
Ralf SchmauderUniversitätsklinikum Jena, Institut für Physiologie II, Jena, Germany.ORCID 0000-0002-8441-4264
Klaus BenndorfUniversitätsklinikum Jena, Institut für Physiologie II, Jena, Germany.
Holger GohlkeJohn von Neumann-Institut für Computing (NIC), Jülich Supercomputing Centre (JSC), and Institut für Biologische Informationsprozesse (IBI-7: Strukturbiochemie), Forschungszentrum Jülich GmbH, Jülich, Germany. gohlke@uni-duesseldorf.de.ORCID 0000-0001-8613-1447
Jana KuschUniversitätsklinikum Jena, Institut für Physiologie II, Jena, Germany. jana.kusch@med.uni-jena.de.ORCID 0000-0001-7206-8133

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hyperpolarization-activated and cyclic nucleotide (HCN) modulated channels are tetrameric cation channels. In each of the four subunits, the intracellular cyclic nucleotide-binding domain (CNBD) is coupled to the transmembrane domain via a helical structure, the C-linker. High-resolution channel structures suggest that the C-linker enables functionally relevant interactions with the opposite subunit, which might be critical for coupling the conformational changes in the CNBD to the channel pore. We combined mutagenesis, patch-clamp technique, confocal patch-clamp fluorometry, and molecular dynamics (MD) simulations to show that residue K464 of the C-linker is relevant for stabilizing the closed state of the mHCN2 channel by forming interactions with the opposite subunit. MD simulations revealed that in the K464E channel, a rotation of the intracellular domain relative to the channel pore is induced, which is similar to the cAMP-induced rotation, weakening the autoinhibitory effect of the unoccupied CL-CNBD region. We suggest that this CL-CNBD rotation is considerably involved in activation-induced affinity increase but only indirectly involved in gate modulation. The adopted poses shown herein are in excellent agreement with previous structural results.

Indexed as

Hyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsNucleotides, CyclicCyclic AMPIon Channel GatingPatch-Clamp TechniquesCyclic AMPHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsNucleotides, Cyclic

Identifiers

PMID35534535
PMCPMC9085832

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.