Evidence map›Paper›PMID 35533764›Full record

ArticleJournal of molecular biology2022

Step-by-Step Regulation of Productive and Abortive Transcription Initiation by Pyrophosphorolysis.

Dylan Plaskon, Claire Evensen, Kate Henderson, Benjamin Palatnik, Takahiro Ishikuri, Hao-Che Wang, Sarah Doughty, M Thomas Record

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Understanding the impact ofFrontiers in molecular biosciences · 2024
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Dylan PlaskonDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, United States.
Claire EvensenDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, United States.
Kate HendersonDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, United States.
Benjamin PalatnikDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, United States.
Takahiro IshikuriDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, United States.
Hao-Che WangBiophysics Program, University of Wisconsin - Madison, Madison, WI 53706, United States.
Sarah DoughtyDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, United States.
M Thomas RecordDepartment of Biochemistry, University of Wisconsin - Madison, Madison, WI 53706, United States; Department of Chemistry, University of Wisconsin - Madison, Madison, WI 53706, United States; Biophysics Program, University of Wisconsin - Madison, Madison, WI 53706, United States. Electronic address: mtrecord@wisc.edu.
University of Wisconsin–Madison · US

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
Mechanisms of RNA Polymerase-Promoter and lac Repressor-Operator InteractionsR35GM118100 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI RECORD, M. THOMAS · 2016 to 2020
$2.6M
Promoter and RNA Polymerase Determinants in Transcription InitiationF32GM122303 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HENDERSON, KATE LYNNE · 2017 to 2018
$116k
NIGMS NIH HHS F32 GM122303NIGMS NIH HHS R35 GM118100NIGMS NIH HHS T32 GM008349
6 · The paper itself

Abstract

An understanding of the kinetics and mechanism of bacterial transcription initiation is needed to understand regulation of gene expression and advance fields from antibiotic discovery to promoter design. The step-by-step forward kinetics and mechanism of initiation and RNA-DNA hybrid growth, made irreversible by omitting pyrophosphate (PPi) byproduct, were determined recently for E. coli RNA polymerase (RNAP)-λP

Indexed as

DNA-Directed RNA PolymerasesEscherichia coliTranscription Initiation, GeneticNucleotidesRNATranscription, GeneticDNA-Directed RNA PolymerasesNucleotidesRNAE. colienzyme kineticspromoter escapepyrophosphateRNA polymerase

Identifiers

PMID35533764
PMCPMC9380721
OpenAlexW4229073684

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.