Evidence map›Paper›PMID 35533497›Full record

ArticleEBioMedicine2022

Analysis of a SARS-CoV-2 convalescent cohort identified a common strategy for escape of vaccine-induced anti-RBD antibodies by Beta and Omicron variants.

Matthew R Chang, Hanzhong Ke, Christian D Coherd, Yufei Wang, Kiyomi Mashima, Gabriella M Kastrunes, Chiung-Yu Huang, Wayne A Marasco

Abstract read
In one paragraph

Article in EBioMedicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  6. The evolution of SARS-CoV-2.Nature reviews. Microbiology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Matthew R ChangDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, United States.
Hanzhong KeDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, United States; Department of Medicine, Harvard Medical School, Boston, MA, United States.
Christian D CoherdDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, United States.
Yufei WangDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, United States; Department of Medicine, Harvard Medical School, Boston, MA, United States.
Kiyomi MashimaDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, United States; Department of Medicine, Harvard Medical School, Boston, MA, United States.
Gabriella M KastrunesDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, United States.
Chiung-Yu HuangDepartment of Epidemiology and Biostatistics, University of California, San Francisco, CA, United States.
Wayne A MarascoDepartment of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, United States; Department of Medicine, Harvard Medical School, Boston, MA, United States. Electronic address: Wayne_Marasco@dfci.harvard.edu.

Funding

Serologic and Molecular Studies of human anti-hCoV antibody cross-immunity and protective responses among endemic HCoVs and SARS-CoV2R01AI161152 · NIAID · DANA-FARBER CANCER INST · PI MARASCO, WAYNE A. · 2021 to 2023
$2.7M
NIAID NIH HHS R01 AI161152
6 · The paper itself

Abstract

backgroundEvolutionary pressure has led to the emergence of SARS-CoV-2 variants, with the most recent Omicron variant containing an unparalleled 30 mutations in the spike protein. Many of these mutations are expected to increase immune evasion, thus making breakthrough cases and re-infection more common.

methodsFrom June 2020 to December 2021 serial blood samples (initial post recovery, 6 months, 12 months) were collected from a COVID-19 convalescent cohort in Boston, MA. Plasma was isolated for use in Mesoscale Discovery based antibody binding assays. Unvaccinated donors or those vaccinated prior to the primary blood draw were excluded from this analysis, as were those who did not have at least two blood draws. Wilcoxon signed rank tests were used to compare pre- and post-vaccination titers and antibody response against different variants, while McNemar tests were used to compare the proportions of achieving ≥ 4 fold increases against different variants.

findingsForty-eight COVID convalescent donors with post-infection vaccination (hybrid immunity) were studied to evaluate the levels of cross-reactive antibodies pre- and post- vaccination against various SARS-CoV-2 Spike and receptor binding domain (RBD) proteins. Vaccination with BNT162b2, mRNA-1273 or Ad26.COV2.S led to a 6·3 to 7·8 fold increase in anti-Spike antibody titers and a 7·0 to 7·4 fold increase in anti-WT, Alpha and Delta RBD antibody. However, a lower response was observed for Beta and Omicron RBDs with only 7/48 (15%) and 15/48 (31%) donors having a ≥4 fold increase in post-vaccination titers against Beta and Omicron RBDs. Structural analysis of the Beta and Omicron RBDs reveal a shared immune escape strategy involving residues K417-E484-N501 that is exploited by these variants of concern.

interpretationThrough mutations of the K417-E484-N501 triad, SARS-CoV-2 has evolved to evade neutralization by the class I/II anti-RBD antibody fraction of hybrid immunity plasma as the polyclonal antibody response post-vaccination shows limitations in the ability to solve the structural requirements to bind the mutant RBDs.

fundingMassachusetts Consortium on Pathogen Readiness (280870.5116709.0016) and the National Institute of Allergy and Infectious Diseases (1R01AI161152-01A1).

Indexed as

COVID-19Viral VaccinesAd26COVS1Antibodies, NeutralizingAntibodies, ViralBNT162 VaccineHumansNeutralization TestsSARS-CoV-2Spike Glycoprotein, CoronavirusAd26COVS1Antibodies, NeutralizingAntibodies, ViralBNT162 VaccineSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Viral VaccinesCOVID-19Hybrid immunityNeutralization escape mutationsOmicron variantSARS-CoV-2Vaccine induced antibody titers

Identifiers

PMID35533497
PMCPMC9073271

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.