Evidence map›Paper›PMID 35533274›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

An approach for evaluating the effects of dietary fiber polysaccharides on the human gut microbiome and plasma proteome.

Omar Delannoy-Bruno, Chandani Desai, Juan J Castillo, Garret Couture, Ruteja A Barve, Vincent Lombard, Bernard Henrissat, Jiye Cheng, Nathan Han, David K Hayashi and 7 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

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  13. Inducible CRISPR-targeted "knockdown" of human gutProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 4 countries.

Omar Delannoy-BrunoEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0002-6637-4609
Chandani DesaiEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Juan J CastilloDepartment of Chemistry, University of California, Davis, CA 95616.
Garret CoutureDepartment of Chemistry, University of California, Davis, CA 95616.
Ruteja A BarveDepartment of Genetics, Washington University School of Medicine, St. Louis, MO 63110.
Vincent LombardArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique and Aix-Marseille Université, 13288 Marseille cedex 9, France.
Bernard HenrissatDepartment of Biotechnology and Biomedicine (DTU Bioengineering), Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark.ORCID 0000-0002-3434-8588
Jiye ChengEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Nathan HanEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
David K HayashiMondelēz Global LLC, Chicago, IL 60607.
Alexandra MeynierMondelēz Global LLC, Chicago, IL 60607.
Sophie VinoyMondelēz Global LLC, Chicago, IL 60607.
Carlito B LebrillaDepartment of Chemistry, University of California, Davis, CA 95616.ORCID 0000-0001-7190-5323
Stacey MarionDepartment of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110.
Andrew C HeathDepartment of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110.
Michael J BarrattEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Jeffrey I GordonEdison Family Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63110.
Washington University in St. Louis · USMondelēz International (United States) · USUniversity of California, Davis · USAix-Marseille Université · FRKing Abdulaziz University · SA

Funding

Washington University Nutrition Obesity Research CenterP30DK056341 · NIDDK · WASHINGTON UNIVERSITY · PI Dominic N Reeds · 1999 to 2026
$30.2M
TRAINING PROGRAM IN CELLULAR AND MOLECULAR BIOLOGYT32GM007067 · NIGMS · WASHINGTON UNIVERSITY · PI TRUE-KROB, HEATHER L · 1985 to 2020
$20.4M
Trace the flow of genes in the gut microbiome of obese and lean twin pairsP01DK078669 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY I · 2007 to 2018
$16.0M
The incorporation of human milk oligosaccharides in brain glycoconjugatesR01GM049077 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEBRILLA, CARLITO B · 1999 to 2024
$6.3M
GUT MICROBIOTA AND OBESITY: STUDIES IN GNOTOBIOTIC MICER01DK070977 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY I, HETTICH, ROBERT L. · 2005 to 2020
$6.3M
MAXIMIZING STUDENT DIVERSITY IN THE BIOMEDICAL SCIENCES AT WASHINGTON UNIVERSITYR25GM103757 · NIGMS · WASHINGTON UNIVERSITY · PI SKEATH, JAMES BENJAMIN · 2013 to 2022
$4.5M
WUSTL Transdisciplinary Pre- and Postdoctoral Training Program in Obesity and Cardiovascular DiseaseT32HL130357 · NHLBI · WASHINGTON UNIVERSITY · PI WILFLEY, DENISE ELLA · 2016 to 2025
$4.3M
Annotating carbohydrate structures to develop markers for consumption of foodR01DK124193 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEBRILLA, CARLITO B, LEMAY, DANIELLE GUYANNE · 2020 to 2024
$2.9M
HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) DK078669HHS | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) DK70977Mondelez Global LLC OTM7409NHLBI NIH HHS T32 HL130357NIDDK NIH HHS P01 DK078669NIDDK NIH HHS P30 DK056341NIDDK NIH HHS R01 DK070977NIDDK NIH HHS R01 DK124193NIGMS NIH HHS R01 GM049077NIGMS NIH HHS R25 GM103757NIGMS NIH HHS T32 GM007067
6 · The paper itself

Abstract

Increases in snack consumption associated with Westernized lifestyles provide an opportunity to introduce nutritious foods into poor diets. We describe two 10-wk-long open label, single group assignment human studies that measured the effects of two snack prototypes containing fiber preparations from two sustainable and scalable sources; the byproducts remaining after isolation of protein from the endosperm of peas and the vesicular pulp remaining after processing oranges for the manufacture of juices. The normal diets of study participants were supplemented with either a pea- or orange fiber-containing snack. We focused our analysis on quantifying the abundances of genes encoding carbohydrate-active enzymes (CAZymes) (glycoside hydrolases and polysaccharide lyases) in the fecal microbiome, mass spectrometric measurements of glycan structures (glycosidic linkages) in feces, plus aptamer-based assessment of levels of 1,300 plasma proteins reflecting a broad range of physiological functions. Computational methods for feature selection identified treatment-discriminatory changes in CAZyme genes that correlated with alterations in levels of fiber-associated glycosidic linkages; these changes in turn correlated with levels of plasma proteins representing diverse biological functions, including transforming growth factor type β/bone morphogenetic protein-mediated fibrosis, vascular endothelial growth factor-related angiogenesis, P38/MAPK-associated immune cell signaling, and obesity-associated hormonal regulators. The approach used represents a way to connect changes in consumer microbiomes produced by specific fiber types with host responses in the context of varying background diets.

Indexed as

Gastrointestinal MicrobiomeMicrobiotaDietary FiberHumansPolysaccharidesProteomeDietary FiberPolysaccharidesProteomecarbohydrate-active enzymesfiber-glycan metabolismgut microbiome-directed foodsmicrobiome-plasma proteome relationships

Identifiers

PMID35533274
PMCPMC9171781
OpenAlexW4229457394

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.