Evidence map›Paper›PMID 35533150›Full record

ArticlePloS one2022

Comprehensive computational analysis reveals H5N1 influenza virus-encoded miRNAs and host-specific targets associated with antiviral immune responses and protein binding.

Fatima Noor, Muhammad Hamzah Saleem, Muhammad Rizwan Javed, Jen-Tsung Chen, Usman Ali Ashfaq, Mohammad K Okla, Mostafa A Abdel-Maksoud, Yasmeen A Alwasel, Wahidah H Al-Qahtani, Huda Alshaya and 2 more

RetractedOpen access · goldAbstract readRetracted Publication
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

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  8. Integrated Pangenome Analysis and Pharmacophore Modeling Revealed Potential Novel Inhibitors againstInternational journal of environmental research and public health · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 5 countries.

Fatima NoorDepartment of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan.
Muhammad Hamzah SaleemCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
Muhammad Rizwan JavedDepartment of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan.
Jen-Tsung ChenDepartment of Life Sciences, National University of Kaohsiung, Kaohsiung, Taiwan.ORCID 0000-0002-3540-4449
Usman Ali AshfaqDepartment of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan.
Mohammad K OklaBotany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia.
Mostafa A Abdel-MaksoudBotany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia.
Yasmeen A AlwaselBotany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia.ORCID 0000-0002-3947-0259
Wahidah H Al-QahtaniDepartment of food sciences & nutrition, College of food & Agriculture sciences, King Saud University, Riyadh, Saudi Arabia.
Huda AlshayaCell and Molecular Biology, University of Arkansas, Fayetteville, AR, United States of America.
Ghulam YasinDepartment of Botany, Bahauddin Zakariya University, Multan, Pakistan.
Sidra AslamDepartment of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan.
Government College University, Faisalabad · PKKing Saud University · SABahauddin Zakariya University · PKHuazhong Agricultural University · CNNational University of Kaohsiung · TWUniversity of Arkansas at Fayetteville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

H5N1 virus (H5N1V) is highly contagious among birds and it was first detected in humans in 1997 during a poultry outbreak in Hong Kong. As the mechanism of its pathogenesis inside the host is still lacking, in this in-silico study we hypothesized that H5N1V might create miRNAs, which could target the genes associated with host cellular regulatory pathways, thus provide persistent refuge to the virus. Using bioinformatics approaches, several H5N1V produced putative miRNAs as well as the host genes targeted by these miRNAs were found. Functional enrichment analysis of targeted genes revealed their involvement in many biological pathways that facilitate their host pathogenesis. Eventually, the microarray dataset (GSE28166) was analyzed to validate the altered expression level of target genes and found the genes involved in protein binding and adaptive immune responses. This study presents novel miRNAs and their targeted genes, which upon experimental validation could facilitate in developing new therapeutics against H5N1V infection.

Indexed as

Influenza A Virus, H5N1 SubtypeInfluenza, HumanMicroRNAsAntiviral AgentsHumansImmunityProtein BindingAntiviral AgentsMicroRNAs

Identifiers

PMID35533150
PMCPMC9084522
OpenAlexW4229457370

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.