Evidence map›Paper›PMID 35532363›Full record

ArticleBlood cancer discovery2022

The Cell Type-Specific 5hmC Landscape and Dynamics of Healthy Human Hematopoiesis and TET2-Mutant Preleukemia.

Yusuke Nakauchi, Armon Azizi, Daniel Thomas, M Ryan Corces, Andreas Reinisch, Rajiv Sharma, David Cruz Hernandez, Thomas Köhnke, Daiki Karigane, Amy Fan and 15 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood cancer discovery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Mechanisms of Thrombocytosis in Iron-Deficiency Anemia.European journal of haematology · 2026
    Review
  3. Article
  4. Review
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  15. Cell identity and 5-hydroxymethylcytosine.Epigenetics & chromatin · 2025
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 3 institutions in 5 countries.

Yusuke Nakauchi *Department of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0002-6943-3811
Armon Azizi *Department of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0002-1353-2060
Daniel ThomasDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0002-0837-1231
M Ryan CorcesDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0001-7465-7652
Andreas ReinischDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0001-9333-7689
Rajiv SharmaDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.
David Cruz HernandezDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0001-6070-1771
Thomas KöhnkeDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.
Daiki KariganeDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.
Amy FanDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0003-1612-1862
Daniel Martinez-KramsDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0001-9731-605X
Melissa StaffordDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.
Satinder KaurDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.
Ritika DuttaDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.
Paul PhanDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.
Asiri EdiriwickremaDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0002-6480-8290
Erin McCarthyBluestar Genomics Inc., San Mateo, California.
Yuhong NingBluestar Genomics Inc., San Mateo, California.
Tierney PhillipsBluestar Genomics Inc., San Mateo, California.
Christopher K EllisonBluestar Genomics Inc., San Mateo, California.
Gulfem D GulerBluestar Genomics Inc., San Mateo, California.
Anna BergamaschiBluestar Genomics Inc., San Mateo, California.
Chin-Jen KuBluestar Genomics Inc., San Mateo, California.
Samuel LevyBluestar Genomics Inc., San Mateo, California.ORCID 0000-0002-4444-5103
Ravindra MajetiDepartment of Medicine, Division of Hematology, Stanford University School of Medicine, Stanford, California.ORCID 0000-0002-5814-0984
California Institute for Regenerative Medicine · USID Genomics (United States) · USGladstone Institutes · US

Funding

Human Acute Myeloid Leukemia Stem CellsR01CA251331 · NCI · STANFORD UNIVERSITY · PI MAJETI, RAVINDRA · 2020 to 2024
$1.8M
Epigenetic, Transcriptional, and Microenvironmental Determinants of Human HSC Self-RenewalR01HL142637 · NHLBI · STANFORD UNIVERSITY · PI MAJETI, RAVINDRA · 2018 to 2021
$1.6M
Austrian Science Fund FWF P 32783NCI NIH HHS R01 CA251331NHLBI NIH HHS R01 HL142637NIH HHS 1R01HL142637
6 · The paper itself

Abstract

The conversion of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC) is a key step in DNA demethylation that is mediated by ten-eleven translocation (TET) enzymes, which require ascorbate/vitamin C. Here, we report the 5hmC landscape of normal hematopoiesis and identify cell type-specific 5hmC profiles associated with active transcription and chromatin accessibility of key hematopoietic regulators. We utilized CRISPR/Cas9 to model TET2 loss-of-function mutations in primary human hematopoietic stem and progenitor cells (HSPC). Disrupted cells exhibited increased colonies in serial replating, defective erythroid/megakaryocytic differentiation, and in vivo competitive advantage and myeloid skewing coupled with reduction of 5hmC at erythroid-associated gene loci. Azacitidine and ascorbate restored 5hmC abundance and slowed or reverted the expansion of TET2-mutant clones in vivo. These results demonstrate the key role of 5hmC in normal hematopoiesis and TET2-mutant phenotypes and raise the possibility of utilizing these agents to further our understanding of preleukemia and clonal hematopoiesis. SIGNIFICANCE: We show that 5-hydroxymethylation profiles are cell type-specific and associated with transcriptional abundance and chromatin accessibility across human hematopoiesis. TET2 loss caused aberrant growth and differentiation phenotypes and disrupted 5hmC and transcriptional landscapes. Treatment of TET2 KO HSPCs with ascorbate or azacitidine reverted 5hmC profiles and restored aberrant phenotypes. This article is highlighted in the In This Issue feature, p. 265.

Indexed as

DioxygenasesMyelodysplastic SyndromesPreleukemiaAzacitidineChromatinDNA-Binding ProteinsHematopoiesisHumansProto-Oncogene ProteinsAzacitidineChromatinDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsTET2 protein, human

Identifiers

PMID35532363
PMCPMC9338760
OpenAlexW4229364690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.