Evidence map›Paper›PMID 35531428›Full record

ArticleAnnals of medicine and surgery (2012)2022

Co-infection of SARS-CoV-2 with other viral respiratory pathogens in Yogyakarta, Indonesia: A cross-sectional study.

Eggi Arguni, Endah Supriyati, Mohamad Saifudin Hakim, Edwin Widyanto Daniwijaya, Firdian Makrufardi, Ayu Rahayu, Anwar Rovik, Utari Saraswati, Farida Nur Oktoviani, Nenes Prastiwi and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Annals of medicine and surgery (2012), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Eggi ArguniDepartment of Child Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Endah SupriyatiCentre for Tropical Medicine, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Mohamad Saifudin HakimDepartment of Microbiology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Edwin Widyanto DaniwijayaDepartment of Microbiology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Firdian MakrufardiDepartment of Child Health, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Ayu RahayuCentre for Tropical Medicine, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Anwar RovikCentre for Tropical Medicine, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Utari SaraswatiCentre for Tropical Medicine, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Farida Nur OktovianiDepartment of Microbiology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Nenes PrastiwiDepartment of Microbiology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Titik NuryastutiDepartment of Microbiology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Tri WibawaDepartment of Microbiology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Sofia Mubarika HaryanaDepartment of Histology and Cell Biology, Faculty of Medicine, Public Health, and Nursing, Universitas Gadjah Mada, Sekip, Sleman, Yogyakarta, 55281, Indonesia.
Universitas Gadjah Mada · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Growing evidence shows that viral co-infection is found repeatedly in patients with Coronavirus Disease-2019 (COVID-19). This is the first report of SARS-CoV-2 co-infection with viral respiratory pathogens in Indonesia. Methods: Over a one month period of April to May 2020, SARS-CoV-2 positive nasopharyngeal swabs in our COVID-19 referral laboratory in Yogyakarta, Indonesia, were tested for viral respiratory pathogens by real-time, reverse transcription polymerase chain reaction (RT-PCR). Proportion of co-infection reported in percentage. Results: Fifty-nine samples were positive for other viral respiratory pathogens among a total of 125 samples. Influenza A virus was detected in 32 samples, Influenza B in 16 samples, Human metapneumovirus in 1 sample, and adenovirus in 10 samples. We did not detect any co-infection with respiratory syncytial virus. Nine (7.2%) patients had co-infection with more than two viruses. Conclusion: Viral co-infection with SARS-CoV-2 is common. These results will provide a helpful reference for diagnosis and clinical treatment of patients with COVID-19.

Indexed as

Co-infectionCoronavirusCOVID-19SARS-CoV-2Viral respiratory pathogens

Identifiers

PMID35531428
PMCPMC9055379
OpenAlexW4225134708

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.