Evidence map›Paper›PMID 35528192›Full record

ArticleCancer research communications2021

The Genetic Landscape of Ocular Adnexa MALT Lymphoma Reveals Frequent Aberrations in NFAT and MEF2B Signaling Pathways.

Marco Magistri, Lanie E Happ, Jeremy Ramdial, XiaoQing Lu, Vasileios Stathias, Kranthi Kunkalla, Nitin Agarwal, Xiaoyu Jiang, Stephan C Schürer, Sander R Dubovy and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cancer research communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Marco MagistriDivision of Hematology, Department of Medicine, University of Miami, Sylvester Comprehensive Cancer Center, Miami, FL.
Lanie E HappCenter for Genomic and Computational Biology and Department of Medicine, University, Duke Durham, NC.
Jeremy RamdialDivision of Hematology, Department of Medicine, University of Miami, Sylvester Comprehensive Cancer Center, Miami, FL.
XiaoQing LuDivision of Hematology, Department of Medicine, University of Miami, Sylvester Comprehensive Cancer Center, Miami, FL.
Vasileios StathiasDepartment of Molecular and Cellular Pharmacology, University of Miami Miller School of Medicine, Miami, FL.
Kranthi KunkallaDivision of Hematopathology, Department of Pathology and Laboratory Medicine, University of Miami, Miami, FL.
Nitin AgarwalDivision of Hematopathology, Department of Pathology and Laboratory Medicine, University of Miami, Miami, FL.
Xiaoyu JiangDivision of Hematology, Department of Medicine, University of Miami, Sylvester Comprehensive Cancer Center, Miami, FL.
Stephan C SchürerDepartment of Molecular and Cellular Pharmacology, University of Miami Miller School of Medicine, Miami, FL.
Sander R DubovyBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL.
Jennifer R ChapmanDivision of Hematopathology, Department of Pathology and Laboratory Medicine, University of Miami, Miami, FL.
Francisco VegaDivision of Hematopathology, Department of Pathology and Laboratory Medicine, University of Miami, Miami, FL.
Sandeep DaveCenter for Genomic and Computational Biology and Department of Medicine, University, Duke Durham, NC.
Izidore S LossosDivision of Hematology, Department of Medicine, University of Miami, Sylvester Comprehensive Cancer Center, Miami, FL.
University of Miami · USSylvester Comprehensive Cancer Center · USDuke University · US

Funding

Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI George S. Grills · 2019 to 2026
$24.1M
Identify the Mechanisms of LMO2-Mediated Inhibition of Homologous Recombination and Establish PARP-Targeted Synthetic Lethality as a New Therapy for DLBCLR01CA233945 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LOSSOS, IZIDORE S, VERDUN, RAMIRO ERNESTO · 2019 to 2023
$1.8M
NCI NIH HHS P30 CA240139NCI NIH HHS R01 CA233945
6 · The paper itself

Abstract

A comprehensive constellation of somatic non-silent mutations and copy number (CN) variations in ocular adnexa marginal zone lymphoma (OAMZL) is unknown. By utilizing whole-exome sequencing in 69 tumors we define the genetic landscape of OAMZL. Mutations and CN changes in CABIN1 (30%), RHOA (26%), TBL1XR1 (22%), and CREBBP (17%) and inactivation of TNFAIP3 (26%) were among the most common aberrations. Candidate cancer driver genes cluster in the B-cell receptor (BCR), NFkB, NOTCH and NFAT signaling pathways. One of the most commonly altered genes is CABIN1, a calcineurin inhibitor acting as a negative regulator of the NFAT and MEF2B transcriptional activity. CABIN1 deletions enhance BCR-stimulated NFAT and MEF2B transcriptional activity, while CABIN1 mutations enhance only MEF2B transcriptional activity by impairing binding of mSin3a to CABIN1. Our data provide an unbiased identification of genetically altered genes that may play a role in the molecular pathogenesis of OAMZL and serve as therapeutic targets.

Indexed as

Eye NeoplasmsLymphoma, B-Cell, Marginal ZoneHumansMEF2 Transcription FactorsMutationNF-kappa BSignal TransductionMEF2B protein, humanMEF2 Transcription FactorsNF-kappa BCABIN1Marginal zone lymphomaMEF2BNFATOrbital adnexa lymphoma

Identifiers

PMID35528192
PMCPMC9075502
OpenAlexW3206514468

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.